Cluster: Rep_3445_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3445
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3445_c_217 | Rep_3445_c_217_3 | 1627 | 2358 | + | 3.A.1.103.4 |
| pfam | Rep_3445_c_217 | Rep_3445_c_217_4 | 2369 | 3571 | + | Glyphos_transf |
| pfam | Rep_3445_c_217 | Rep_3445_c_217_5 | 3579 | 4589 | + | Stealth_CR2 | Stealth_CR1 |
| CAZyme | Rep_3445_c_217 | Rep_3445_c_217_6 | 4658 | 6952 | + | GT4 |
| TF | Rep_3445_c_217 | Rep_3445_c_217_7 | 7140 | 7991 | + | HTH_3 |
| pfam | Rep_3445_c_217 | Rep_3445_c_217_8 | 8171 | 8629 | + | C_GCAxxG_C_C |
| TC | Rep_3445_c_217 | Rep_3445_c_217_9 | 8756 | 9313 | + | 3.A.1.25.5 |
Gene ID: Rep_3445_c_217_3
Type: TC
Location: 1627 - 2358 (+)
Type: TC
Location: 1627 - 2358 (+)
Gene ID: Rep_3445_c_217_4
Type: pfam
Location: 2369 - 3571 (+)
Type: pfam
Location: 2369 - 3571 (+)
Gene ID: Rep_3445_c_217_5
Type: pfam
Location: 3579 - 4589 (+)
Type: pfam
Location: 3579 - 4589 (+)
Gene ID: Rep_3445_c_217_6
Type: CAZyme
Location: 4658 - 6952 (+)
Type: CAZyme
Location: 4658 - 6952 (+)
Gene ID: Rep_3445_c_217_7
Type: TF
Location: 7140 - 7991 (+)
Type: TF
Location: 7140 - 7991 (+)
Gene ID: Rep_3445_c_217_8
Type: pfam
Location: 8171 - 8629 (+)
Type: pfam
Location: 8171 - 8629 (+)
Gene ID: Rep_3445_c_217_9
Type: TC
Location: 8756 - 9313 (+)
Type: TC
Location: 8756 - 9313 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.