Cluster: Rep_3445_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3445
- CGC Family ID: CGCFAM_00392
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3445_c_174 | Rep_3445_c_174_3 | 1800 | 3488 | + | 3.A.1.112.9 |
| TF | Rep_3445_c_174 | Rep_3445_c_174_4 | 3618 | 4313 | + | HTH_3 |
| NULL(UNKNOWN) | Rep_3445_c_174 | Rep_3445_c_174_5 | 4387 | 4557 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3445_c_174 | Rep_3445_c_174_6 | 4608 | 5720 | - | GH25 |
Gene ID: Rep_3445_c_174_3
Type: TC
Location: 1800 - 3488 (+)
Type: TC
Location: 1800 - 3488 (+)
Gene ID: Rep_3445_c_174_4
Type: TF
Location: 3618 - 4313 (+)
Type: TF
Location: 3618 - 4313 (+)
Gene ID: Rep_3445_c_174_5
Type:
Location: 4387 - 4557 (-)
Type:
Location: 4387 - 4557 (-)
Gene ID: Rep_3445_c_174_6
Type: CAZyme
Location: 4608 - 5720 (-)
Type: CAZyme
Location: 4608 - 5720 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.