Cluster: Rep_3436_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3436
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3436_c_15 | Rep_3436_c_15_21 | 17419 | 18261 | + | 3.A.1.103.5 |
| TC | Rep_3436_c_15 | Rep_3436_c_15_22 | 18265 | 19539 | + | 3.A.1.103.5 |
| pfam | Rep_3436_c_15 | Rep_3436_c_15_23 | 19603 | 21324 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | Rep_3436_c_15 | Rep_3436_c_15_24 | 21473 | 24322 | - | Acyl_transf_3 |
| CAZyme | Rep_3436_c_15 | Rep_3436_c_15_25 | 24533 | 25159 | - | GT2 |
Gene ID: Rep_3436_c_15_21
Type: TC
Location: 17419 - 18261 (+)
Type: TC
Location: 17419 - 18261 (+)
Gene ID: Rep_3436_c_15_22
Type: TC
Location: 18265 - 19539 (+)
Type: TC
Location: 18265 - 19539 (+)
Gene ID: Rep_3436_c_15_23
Type: pfam
Location: 19603 - 21324 (-)
Type: pfam
Location: 19603 - 21324 (-)
Gene ID: Rep_3436_c_15_24
Type: pfam
Location: 21473 - 24322 (-)
Type: pfam
Location: 21473 - 24322 (-)
Gene ID: Rep_3436_c_15_25
Type: CAZyme
Location: 24533 - 25159 (-)
Type: CAZyme
Location: 24533 - 25159 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.