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Cluster: Rep_3436_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3436_c_275 Rep_3436_c_275_3 3644 4708 + GH3
pfam Rep_3436_c_275 Rep_3436_c_275_4 4892 5329 + OAD_gamma
TC Rep_3436_c_275 Rep_3436_c_275_5 5360 6598 + 3.B.1.1.3
pfam Rep_3436_c_275 Rep_3436_c_275_6 6779 7444 + Wzz
TC Rep_3436_c_275 Rep_3436_c_275_7 7450 8178 + 8.A.3.1.2
STP Rep_3436_c_275 Rep_3436_c_275_8 8361 9641 + Aminotran_1_2
TC Rep_3436_c_275 Rep_3436_c_275_9 9883 11292 + 2.A.6.4.2
TC Rep_3436_c_275 Rep_3436_c_275_10 11282 12301 + 2.A.6.4.2
TC Rep_3436_c_275 Rep_3436_c_275_11 12383 13354 + 3.A.1.15.3
TC Rep_3436_c_275 Rep_3436_c_275_12 13354 14097 + 3.A.1.15.8
TC Rep_3436_c_275 Rep_3436_c_275_13 14094 14933 + 3.A.1.15.3
pfam Rep_3436_c_275 Rep_3436_c_275_14 14934 15314 - DUF4363
pfam Rep_3436_c_275 Rep_3436_c_275_15 15311 15988 - DUF421
TC Rep_3436_c_275 Rep_3436_c_275_16 16080 17549 + 9.A.11.1.2
Gene ID: Rep_3436_c_275_3
Type: CAZyme
Location: 3644 - 4708 (+)
Gene ID: Rep_3436_c_275_4
Type: pfam
Location: 4892 - 5329 (+)
Gene ID: Rep_3436_c_275_5
Type: TC
Location: 5360 - 6598 (+)
Gene ID: Rep_3436_c_275_6
Type: pfam
Location: 6779 - 7444 (+)
Gene ID: Rep_3436_c_275_7
Type: TC
Location: 7450 - 8178 (+)
Gene ID: Rep_3436_c_275_8
Type: STP
Location: 8361 - 9641 (+)
Gene ID: Rep_3436_c_275_9
Type: TC
Location: 9883 - 11292 (+)
Gene ID: Rep_3436_c_275_10
Type: TC
Location: 11282 - 12301 (+)
Gene ID: Rep_3436_c_275_11
Type: TC
Location: 12383 - 13354 (+)
Gene ID: Rep_3436_c_275_12
Type: TC
Location: 13354 - 14097 (+)
Gene ID: Rep_3436_c_275_13
Type: TC
Location: 14094 - 14933 (+)
Gene ID: Rep_3436_c_275_14
Type: pfam
Location: 14934 - 15314 (-)
Gene ID: Rep_3436_c_275_15
Type: pfam
Location: 15311 - 15988 (-)
Gene ID: Rep_3436_c_275_16
Type: TC
Location: 16080 - 17549 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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