Cluster: Rep_3436_CGC13
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_3436
- CGC Family ID: CGCFAM_09223
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_11 | 10926 | 12023 | + | GT4 |
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_12 | 12056 | 13171 | + | GT4 |
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_13 | 13171 | 14055 | + | GT2 |
| pfam | Rep_3436_c_205 | Rep_3436_c_205_14 | 14121 | 14660 | + | Hexapep |
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_15 | 14673 | 15377 | + | GT32 |
| pfam | Rep_3436_c_205 | Rep_3436_c_205_16 | 15410 | 16285 | + | GINT1_N |
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_17 | 16291 | 17364 | + | GT4 |
| pfam | Rep_3436_c_205 | Rep_3436_c_205_18 | 17412 | 18056 | + | DUF1919 |
| pfam | Rep_3436_c_205 | Rep_3436_c_205_19 | 18135 | 19187 | + | Acyl_transf_3 |
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_20 | 19206 | 20162 | + | GT2 |
| pfam | Rep_3436_c_205 | Rep_3436_c_205_21 | 20229 | 21038 | + | LicD |
| CAZyme | Rep_3436_c_205 | Rep_3436_c_205_22 | 21150 | 22082 | + | GT2 |
| NULL(UNKNOWN) | Rep_3436_c_205 | Rep_3436_c_205_23 | 22133 | 23653 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3436_c_205 | Rep_3436_c_205_24 | 23847 | 25715 | + | 9.B.18.2.1 |
| STP | Rep_3436_c_205 | Rep_3436_c_205_25 | 25755 | 27584 | + | SIS | SIS |
| TC | Rep_3436_c_205 | Rep_3436_c_205_26 | 27610 | 29115 | + | 4.C.1.1.7 |
Gene ID: Rep_3436_c_205_11
Type: CAZyme
Location: 10926 - 12023 (+)
Type: CAZyme
Location: 10926 - 12023 (+)
Gene ID: Rep_3436_c_205_12
Type: CAZyme
Location: 12056 - 13171 (+)
Type: CAZyme
Location: 12056 - 13171 (+)
Gene ID: Rep_3436_c_205_13
Type: CAZyme
Location: 13171 - 14055 (+)
Type: CAZyme
Location: 13171 - 14055 (+)
Gene ID: Rep_3436_c_205_14
Type: pfam
Location: 14121 - 14660 (+)
Type: pfam
Location: 14121 - 14660 (+)
Gene ID: Rep_3436_c_205_15
Type: CAZyme
Location: 14673 - 15377 (+)
Type: CAZyme
Location: 14673 - 15377 (+)
Gene ID: Rep_3436_c_205_16
Type: pfam
Location: 15410 - 16285 (+)
Type: pfam
Location: 15410 - 16285 (+)
Gene ID: Rep_3436_c_205_17
Type: CAZyme
Location: 16291 - 17364 (+)
Type: CAZyme
Location: 16291 - 17364 (+)
Gene ID: Rep_3436_c_205_18
Type: pfam
Location: 17412 - 18056 (+)
Type: pfam
Location: 17412 - 18056 (+)
Gene ID: Rep_3436_c_205_19
Type: pfam
Location: 18135 - 19187 (+)
Type: pfam
Location: 18135 - 19187 (+)
Gene ID: Rep_3436_c_205_20
Type: CAZyme
Location: 19206 - 20162 (+)
Type: CAZyme
Location: 19206 - 20162 (+)
Gene ID: Rep_3436_c_205_21
Type: pfam
Location: 20229 - 21038 (+)
Type: pfam
Location: 20229 - 21038 (+)
Gene ID: Rep_3436_c_205_22
Type: CAZyme
Location: 21150 - 22082 (+)
Type: CAZyme
Location: 21150 - 22082 (+)
Gene ID: Rep_3436_c_205_23
Type:
Location: 22133 - 23653 (+)
Type:
Location: 22133 - 23653 (+)
Gene ID: Rep_3436_c_205_24
Type: TC
Location: 23847 - 25715 (+)
Type: TC
Location: 23847 - 25715 (+)
Gene ID: Rep_3436_c_205_25
Type: STP
Location: 25755 - 27584 (+)
Type: STP
Location: 25755 - 27584 (+)
Gene ID: Rep_3436_c_205_26
Type: TC
Location: 27610 - 29115 (+)
Type: TC
Location: 27610 - 29115 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.