Cluster: Rep_3436_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3436
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3436_c_181 | Rep_3436_c_181_2 | 937 | 1902 | + | 3.A.1.132.1 |
| TC | Rep_3436_c_181 | Rep_3436_c_181_3 | 1902 | 2606 | + | 3.A.1.132.1 |
| pfam | Rep_3436_c_181 | Rep_3436_c_181_4 | 2621 | 4228 | + | ABC_transp_aux | DUF7088 |
| pfam | Rep_3436_c_181 | Rep_3436_c_181_5 | 4228 | 5772 | + | DUF4340 | DUF4340 |
| CAZyme | Rep_3436_c_181 | Rep_3436_c_181_6 | 6154 | 7116 | + | GT2 |
Gene ID: Rep_3436_c_181_2
Type: TC
Location: 937 - 1902 (+)
Type: TC
Location: 937 - 1902 (+)
Gene ID: Rep_3436_c_181_3
Type: TC
Location: 1902 - 2606 (+)
Type: TC
Location: 1902 - 2606 (+)
Gene ID: Rep_3436_c_181_4
Type: pfam
Location: 2621 - 4228 (+)
Type: pfam
Location: 2621 - 4228 (+)
Gene ID: Rep_3436_c_181_5
Type: pfam
Location: 4228 - 5772 (+)
Type: pfam
Location: 4228 - 5772 (+)
Gene ID: Rep_3436_c_181_6
Type: CAZyme
Location: 6154 - 7116 (+)
Type: CAZyme
Location: 6154 - 7116 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.