Cluster: Rep_3434_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3434
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3434_c_116 | Rep_3434_c_116_5 | 4100 | 5173 | - | 3.A.1.11.7 |
| TC | Rep_3434_c_116 | Rep_3434_c_116_6 | 5205 | 6020 | - | 3.A.1.11.8 |
| TC | Rep_3434_c_116 | Rep_3434_c_116_7 | 6017 | 6808 | - | 3.A.1.11.8 |
| TC | Rep_3434_c_116 | Rep_3434_c_116_8 | 6811 | 8229 | - | 3.A.1.11.8 |
| CAZyme | Rep_3434_c_116 | Rep_3434_c_116_9 | 8638 | 12207 | + | GH13_28 |
| NULL(UNKNOWN) | Rep_3434_c_116 | Rep_3434_c_116_10 | 12383 | 12943 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3434_c_116 | Rep_3434_c_116_11 | 12996 | 14633 | - | GH13_20 |
Gene ID: Rep_3434_c_116_5
Type: TC
Location: 4100 - 5173 (-)
Type: TC
Location: 4100 - 5173 (-)
Gene ID: Rep_3434_c_116_6
Type: TC
Location: 5205 - 6020 (-)
Type: TC
Location: 5205 - 6020 (-)
Gene ID: Rep_3434_c_116_7
Type: TC
Location: 6017 - 6808 (-)
Type: TC
Location: 6017 - 6808 (-)
Gene ID: Rep_3434_c_116_8
Type: TC
Location: 6811 - 8229 (-)
Type: TC
Location: 6811 - 8229 (-)
Gene ID: Rep_3434_c_116_9
Type: CAZyme
Location: 8638 - 12207 (+)
Type: CAZyme
Location: 8638 - 12207 (+)
Gene ID: Rep_3434_c_116_10
Type:
Location: 12383 - 12943 (+)
Type:
Location: 12383 - 12943 (+)
Gene ID: Rep_3434_c_116_11
Type: CAZyme
Location: 12996 - 14633 (-)
Type: CAZyme
Location: 12996 - 14633 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp946414115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.