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Cluster: Rep_3434_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3434_c_71 Rep_3434_c_71_13 17836 18999 + GH3
pfam Rep_3434_c_71 Rep_3434_c_71_14 19183 19623 + OAD_gamma
TC Rep_3434_c_71 Rep_3434_c_71_15 19654 20892 + 3.B.1.1.3
pfam Rep_3434_c_71 Rep_3434_c_71_16 21070 21735 + Wzz
TC Rep_3434_c_71 Rep_3434_c_71_17 21741 22463 + 8.A.3.1.2
STP Rep_3434_c_71 Rep_3434_c_71_18 22646 23926 + Aminotran_1_2
TC Rep_3434_c_71 Rep_3434_c_71_19 24169 25578 + 2.A.6.4.2
TC Rep_3434_c_71 Rep_3434_c_71_20 25568 26587 + 2.A.6.4.2
TC Rep_3434_c_71 Rep_3434_c_71_21 26670 27638 + 3.A.1.15.3
TC Rep_3434_c_71 Rep_3434_c_71_22 27638 28381 + 3.A.1.15.13
TC Rep_3434_c_71 Rep_3434_c_71_23 28378 29217 + 3.A.1.15.3
pfam Rep_3434_c_71 Rep_3434_c_71_24 29218 29598 - DUF4363
pfam Rep_3434_c_71 Rep_3434_c_71_25 29595 30305 - DUF421
TC Rep_3434_c_71 Rep_3434_c_71_26 30364 31833 + 9.A.11.1.2
Gene ID: Rep_3434_c_71_13
Type: CAZyme
Location: 17836 - 18999 (+)
Gene ID: Rep_3434_c_71_14
Type: pfam
Location: 19183 - 19623 (+)
Gene ID: Rep_3434_c_71_15
Type: TC
Location: 19654 - 20892 (+)
Gene ID: Rep_3434_c_71_16
Type: pfam
Location: 21070 - 21735 (+)
Gene ID: Rep_3434_c_71_17
Type: TC
Location: 21741 - 22463 (+)
Gene ID: Rep_3434_c_71_18
Type: STP
Location: 22646 - 23926 (+)
Gene ID: Rep_3434_c_71_19
Type: TC
Location: 24169 - 25578 (+)
Gene ID: Rep_3434_c_71_20
Type: TC
Location: 25568 - 26587 (+)
Gene ID: Rep_3434_c_71_21
Type: TC
Location: 26670 - 27638 (+)
Gene ID: Rep_3434_c_71_22
Type: TC
Location: 27638 - 28381 (+)
Gene ID: Rep_3434_c_71_23
Type: TC
Location: 28378 - 29217 (+)
Gene ID: Rep_3434_c_71_24
Type: pfam
Location: 29218 - 29598 (-)
Gene ID: Rep_3434_c_71_25
Type: pfam
Location: 29595 - 30305 (-)
Gene ID: Rep_3434_c_71_26
Type: TC
Location: 30364 - 31833 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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