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Cluster: Rep_3434_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3434_c_151 Rep_3434_c_151_10 10243 11364 + GT4
TC Rep_3434_c_151 Rep_3434_c_151_11 11397 12482 + 9.B.183.1.9
NULL(UNKNOWN) Rep_3434_c_151 Rep_3434_c_151_12 12502 12687 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3434_c_151 Rep_3434_c_151_13 12760 13632 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme Rep_3434_c_151 Rep_3434_c_151_14 13629 14609 + GT2
CAZyme Rep_3434_c_151 Rep_3434_c_151_15 14615 15520 + GT2
CAZyme Rep_3434_c_151 Rep_3434_c_151_16 15520 16632 + GT4
CAZyme Rep_3434_c_151 Rep_3434_c_151_17 16641 17624 + GT2
CAZyme Rep_3434_c_151 Rep_3434_c_151_18 17648 18628 + GT2
CAZyme Rep_3434_c_151 Rep_3434_c_151_19 18630 19631 + GT2
Gene ID: Rep_3434_c_151_10
Type: CAZyme
Location: 10243 - 11364 (+)
Gene ID: Rep_3434_c_151_11
Type: TC
Location: 11397 - 12482 (+)
Gene ID: Rep_3434_c_151_12
Type:
Location: 12502 - 12687 (+)
Gene ID: Rep_3434_c_151_13
Type: pfam
Location: 12760 - 13632 (+)
Gene ID: Rep_3434_c_151_14
Type: CAZyme
Location: 13629 - 14609 (+)
Gene ID: Rep_3434_c_151_15
Type: CAZyme
Location: 14615 - 15520 (+)
Gene ID: Rep_3434_c_151_16
Type: CAZyme
Location: 15520 - 16632 (+)
Gene ID: Rep_3434_c_151_17
Type: CAZyme
Location: 16641 - 17624 (+)
Gene ID: Rep_3434_c_151_18
Type: CAZyme
Location: 17648 - 18628 (+)
Gene ID: Rep_3434_c_151_19
Type: CAZyme
Location: 18630 - 19631 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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