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Cluster: Rep_3434_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3434_c_9 Rep_3434_c_9_8 9628 11130 + 3.A.1.1.27
TC Rep_3434_c_9 Rep_3434_c_9_9 11127 11990 + 3.A.1.1.27
CAZyme Rep_3434_c_9 Rep_3434_c_9_10 12115 13764 + GH13_36
pfam Rep_3434_c_9 Rep_3434_c_9_11 13849 14217 - SpoVAC_SpoVAEB
TC Rep_3434_c_9 Rep_3434_c_9_12 14460 15425 + 3.A.1.132.1
TC Rep_3434_c_9 Rep_3434_c_9_13 15425 16129 + 3.A.1.132.4
pfam Rep_3434_c_9 Rep_3434_c_9_14 16144 17754 + ABC_transp_aux | DUF7088
pfam Rep_3434_c_9 Rep_3434_c_9_15 17754 19298 + DUF4340
CAZyme Rep_3434_c_9 Rep_3434_c_9_16 19469 20431 + GT2
Gene ID: Rep_3434_c_9_8
Type: TC
Location: 9628 - 11130 (+)
Gene ID: Rep_3434_c_9_9
Type: TC
Location: 11127 - 11990 (+)
Gene ID: Rep_3434_c_9_10
Type: CAZyme
Location: 12115 - 13764 (+)
Gene ID: Rep_3434_c_9_11
Type: pfam
Location: 13849 - 14217 (-)
Gene ID: Rep_3434_c_9_12
Type: TC
Location: 14460 - 15425 (+)
Gene ID: Rep_3434_c_9_13
Type: TC
Location: 15425 - 16129 (+)
Gene ID: Rep_3434_c_9_14
Type: pfam
Location: 16144 - 17754 (+)
Gene ID: Rep_3434_c_9_15
Type: pfam
Location: 17754 - 19298 (+)
Gene ID: Rep_3434_c_9_16
Type: CAZyme
Location: 19469 - 20431 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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