Cluster: Rep_3432_CGC7
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3432
- CGC Family ID: CGCFAM_04071
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_1014 | 1136223 | 1138043 | + | GT2 |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_1015 | 1138098 | 1139795 | - | Glft2_N |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_1016 | 1139872 | 1140978 | - | FAD_binding_2 | GLF | NAD_binding_8 |
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_1017 | 1140984 | 1141886 | - | GT111 |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_1018 | 1142021 | 1142275 | - | Gram_pos_anchor |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_1019 | 1142421 | 1143545 | - | EpsG |
| TC | Rep_3432_c_0 | Rep_3432_c_0_1020 | 1143560 | 1144957 | - | 9.B.18.1.1 |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_1021 | 1144997 | 1146295 | - | Big_2 | Big_2 |
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_1022 | 1146309 | 1147439 | - | GT4 |
| TC | Rep_3432_c_0 | Rep_3432_c_0_1023 | 1147426 | 1148214 | - | 3.A.1.103.5 |
| TC | Rep_3432_c_0 | Rep_3432_c_0_1024 | 1148230 | 1149012 | - | 3.A.1.103.6 |
Gene ID: Rep_3432_c_0_1014
Type: CAZyme
Location: 1136223 - 1138043 (+)
Type: CAZyme
Location: 1136223 - 1138043 (+)
Gene ID: Rep_3432_c_0_1015
Type: pfam
Location: 1138098 - 1139795 (-)
Type: pfam
Location: 1138098 - 1139795 (-)
Gene ID: Rep_3432_c_0_1016
Type: pfam
Location: 1139872 - 1140978 (-)
Type: pfam
Location: 1139872 - 1140978 (-)
Gene ID: Rep_3432_c_0_1017
Type: CAZyme
Location: 1140984 - 1141886 (-)
Type: CAZyme
Location: 1140984 - 1141886 (-)
Gene ID: Rep_3432_c_0_1018
Type: pfam
Location: 1142021 - 1142275 (-)
Type: pfam
Location: 1142021 - 1142275 (-)
Gene ID: Rep_3432_c_0_1019
Type: pfam
Location: 1142421 - 1143545 (-)
Type: pfam
Location: 1142421 - 1143545 (-)
Gene ID: Rep_3432_c_0_1020
Type: TC
Location: 1143560 - 1144957 (-)
Type: TC
Location: 1143560 - 1144957 (-)
Gene ID: Rep_3432_c_0_1021
Type: pfam
Location: 1144997 - 1146295 (-)
Type: pfam
Location: 1144997 - 1146295 (-)
Gene ID: Rep_3432_c_0_1022
Type: CAZyme
Location: 1146309 - 1147439 (-)
Type: CAZyme
Location: 1146309 - 1147439 (-)
Gene ID: Rep_3432_c_0_1023
Type: TC
Location: 1147426 - 1148214 (-)
Type: TC
Location: 1147426 - 1148214 (-)
Gene ID: Rep_3432_c_0_1024
Type: TC
Location: 1148230 - 1149012 (-)
Type: TC
Location: 1148230 - 1149012 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Species
Pseudoruminococcus massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.