Cluster: Rep_3432_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3432
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3432_c_0 | Rep_3432_c_0_637 | 753944 | 754948 | - | 2.A.6.4.2 |
| TC | Rep_3432_c_0 | Rep_3432_c_0_638 | 754951 | 756372 | - | 2.A.6.4.2 |
| STP | Rep_3432_c_0 | Rep_3432_c_0_639 | 756588 | 757871 | - | Aminotran_1_2 |
| NULL(UNKNOWN) | Rep_3432_c_0 | Rep_3432_c_0_640 | 758086 | 758445 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_641 | 758744 | 761500 | + | CBM41 | GH13_14 |
Gene ID: Rep_3432_c_0_637
Type: TC
Location: 753944 - 754948 (-)
Type: TC
Location: 753944 - 754948 (-)
Gene ID: Rep_3432_c_0_638
Type: TC
Location: 754951 - 756372 (-)
Type: TC
Location: 754951 - 756372 (-)
Gene ID: Rep_3432_c_0_639
Type: STP
Location: 756588 - 757871 (-)
Type: STP
Location: 756588 - 757871 (-)
Gene ID: Rep_3432_c_0_640
Type:
Location: 758086 - 758445 (+)
Type:
Location: 758086 - 758445 (+)
Gene ID: Rep_3432_c_0_641
Type: CAZyme
Location: 758744 - 761500 (+)
Type: CAZyme
Location: 758744 - 761500 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Species
Pseudoruminococcus massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.