Cluster: Rep_3432_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3432
- CGC Family ID: CGCFAM_00328
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3432_c_0 | Rep_3432_c_0_2027 | 2190925 | 2192034 | - | 3.A.1.1.26 |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_2028 | 2192272 | 2192991 | - | PseudoU_synth_2 | S4 |
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_2029 | 2193497 | 2194588 | + | GT2 |
| sulfatase | Rep_3432_c_0 | Rep_3432_c_0_2030 | 2194786 | 2197977 | + | S1_65 |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_2031 | 2198218 | 2199303 | + | HTH_30 | GGDEF_2 |
| TC | Rep_3432_c_0 | Rep_3432_c_0_2032 | 2199520 | 2200197 | + | 3.A.1.140.1 |
Gene ID: Rep_3432_c_0_2027
Type: TC
Location: 2190925 - 2192034 (-)
Type: TC
Location: 2190925 - 2192034 (-)
Gene ID: Rep_3432_c_0_2028
Type: pfam
Location: 2192272 - 2192991 (-)
Type: pfam
Location: 2192272 - 2192991 (-)
Gene ID: Rep_3432_c_0_2029
Type: CAZyme
Location: 2193497 - 2194588 (+)
Type: CAZyme
Location: 2193497 - 2194588 (+)
Gene ID: Rep_3432_c_0_2030
Type: sulfatase
Location: 2194786 - 2197977 (+)
Type: sulfatase
Location: 2194786 - 2197977 (+)
Gene ID: Rep_3432_c_0_2031
Type: pfam
Location: 2198218 - 2199303 (+)
Type: pfam
Location: 2198218 - 2199303 (+)
Gene ID: Rep_3432_c_0_2032
Type: TC
Location: 2199520 - 2200197 (+)
Type: TC
Location: 2199520 - 2200197 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Species
Pseudoruminococcus massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.