Cluster: Rep_3432_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3432
- CGC Family ID: CGCFAM_06175
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_1921 | 2070296 | 2073952 | - | CBM26 | GH13_42 |
| CAZyme | Rep_3432_c_0 | Rep_3432_c_0_1922 | 2074318 | 2078745 | - | CBM74 | GH13_28 |
| TC | Rep_3432_c_0 | Rep_3432_c_0_1923 | 2079441 | 2080145 | + | 3.A.1.122.7 |
| pfam | Rep_3432_c_0 | Rep_3432_c_0_1924 | 2080179 | 2083667 | + | FtsX | FtsX |
| TC | Rep_3432_c_0 | Rep_3432_c_0_1925 | 2084285 | 2085046 | + | 1.A.16.3.2 |
Gene ID: Rep_3432_c_0_1921
Type: CAZyme
Location: 2070296 - 2073952 (-)
Type: CAZyme
Location: 2070296 - 2073952 (-)
Gene ID: Rep_3432_c_0_1922
Type: CAZyme
Location: 2074318 - 2078745 (-)
Type: CAZyme
Location: 2074318 - 2078745 (-)
Gene ID: Rep_3432_c_0_1923
Type: TC
Location: 2079441 - 2080145 (+)
Type: TC
Location: 2079441 - 2080145 (+)
Gene ID: Rep_3432_c_0_1924
Type: pfam
Location: 2080179 - 2083667 (+)
Type: pfam
Location: 2080179 - 2083667 (+)
Gene ID: Rep_3432_c_0_1925
Type: TC
Location: 2084285 - 2085046 (+)
Type: TC
Location: 2084285 - 2085046 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Species
Pseudoruminococcus massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.