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Cluster: Rep_3430_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3430_c_36 Rep_3430_c_36_1 240 869 + 9.B.18.1.3
CAZyme Rep_3430_c_36 Rep_3430_c_36_2 859 1953 + GT4
CAZyme Rep_3430_c_36 Rep_3430_c_36_3 1970 3061 + GT4
CAZyme Rep_3430_c_36 Rep_3430_c_36_4 3063 3974 + GT2
TC Rep_3430_c_36 Rep_3430_c_36_5 3975 5102 + 9.B.183.1.9
pfam Rep_3430_c_36 Rep_3430_c_36_6 5140 5679 + Hexapep
CAZyme Rep_3430_c_36 Rep_3430_c_36_7 5687 6799 + GT4
CAZyme Rep_3430_c_36 Rep_3430_c_36_8 6796 7794 + GT2
CAZyme Rep_3430_c_36 Rep_3430_c_36_9 7808 8782 + GT2
Gene ID: Rep_3430_c_36_1
Type: TC
Location: 240 - 869 (+)
Gene ID: Rep_3430_c_36_2
Type: CAZyme
Location: 859 - 1953 (+)
Gene ID: Rep_3430_c_36_3
Type: CAZyme
Location: 1970 - 3061 (+)
Gene ID: Rep_3430_c_36_4
Type: CAZyme
Location: 3063 - 3974 (+)
Gene ID: Rep_3430_c_36_5
Type: TC
Location: 3975 - 5102 (+)
Gene ID: Rep_3430_c_36_6
Type: pfam
Location: 5140 - 5679 (+)
Gene ID: Rep_3430_c_36_7
Type: CAZyme
Location: 5687 - 6799 (+)
Gene ID: Rep_3430_c_36_8
Type: CAZyme
Location: 6796 - 7794 (+)
Gene ID: Rep_3430_c_36_9
Type: CAZyme
Location: 7808 - 8782 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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