Cluster: Rep_3430_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_3430
- CGC Family ID: CGCFAM_00004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3430_c_34 | Rep_3430_c_34_12 | 8988 | 9551 | - | 3.A.1.25.5 |
| NULL(UNKNOWN) | Rep_3430_c_34 | Rep_3430_c_34_13 | 9678 | 10229 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3430_c_34 | Rep_3430_c_34_14 | 10389 | 10892 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3430_c_34 | Rep_3430_c_34_15 | 11028 | 12458 | - | GT5 |
| pfam | Rep_3430_c_34 | Rep_3430_c_34_16 | 12509 | 13627 | - | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_3430_c_34 | Rep_3430_c_34_17 | 13627 | 14844 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | Rep_3430_c_34 | Rep_3430_c_34_18 | 14929 | 17127 | - | GH13_9 |
Gene ID: Rep_3430_c_34_12
Type: TC
Location: 8988 - 9551 (-)
Type: TC
Location: 8988 - 9551 (-)
Gene ID: Rep_3430_c_34_13
Type:
Location: 9678 - 10229 (-)
Type:
Location: 9678 - 10229 (-)
Gene ID: Rep_3430_c_34_14
Type:
Location: 10389 - 10892 (+)
Type:
Location: 10389 - 10892 (+)
Gene ID: Rep_3430_c_34_15
Type: CAZyme
Location: 11028 - 12458 (-)
Type: CAZyme
Location: 11028 - 12458 (-)
Gene ID: Rep_3430_c_34_16
Type: pfam
Location: 12509 - 13627 (-)
Type: pfam
Location: 12509 - 13627 (-)
Gene ID: Rep_3430_c_34_17
Type: pfam
Location: 13627 - 14844 (-)
Type: pfam
Location: 13627 - 14844 (-)
Gene ID: Rep_3430_c_34_18
Type: CAZyme
Location: 14929 - 17127 (-)
Type: CAZyme
Location: 14929 - 17127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-964
Species
CAG-964 sp902789345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.