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Cluster: Rep_3430_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3430_c_20 Rep_3430_c_20_1 407 1789 + 2.A.6.4.2
TC Rep_3430_c_20 Rep_3430_c_20_2 1789 2763 + 2.A.6.4.2
TC Rep_3430_c_20 Rep_3430_c_20_3 3057 3872 + 3.A.1.15.8
TC Rep_3430_c_20 Rep_3430_c_20_4 3850 4659 + 3.A.1.15.10
pfam Rep_3430_c_20 Rep_3430_c_20_5 4835 5905 + Acyl_transf_3
CAZyme Rep_3430_c_20 Rep_3430_c_20_6 6252 9236 + GH13_14
pfam Rep_3430_c_20 Rep_3430_c_20_7 9608 11299 + HMGL-like | LeuA_dimer | IPMS_D2
TC Rep_3430_c_20 Rep_3430_c_20_8 11449 12801 - 2.A.66.1.25
Gene ID: Rep_3430_c_20_1
Type: TC
Location: 407 - 1789 (+)
Gene ID: Rep_3430_c_20_2
Type: TC
Location: 1789 - 2763 (+)
Gene ID: Rep_3430_c_20_3
Type: TC
Location: 3057 - 3872 (+)
Gene ID: Rep_3430_c_20_4
Type: TC
Location: 3850 - 4659 (+)
Gene ID: Rep_3430_c_20_5
Type: pfam
Location: 4835 - 5905 (+)
Gene ID: Rep_3430_c_20_6
Type: CAZyme
Location: 6252 - 9236 (+)
Gene ID: Rep_3430_c_20_7
Type: pfam
Location: 9608 - 11299 (+)
Gene ID: Rep_3430_c_20_8
Type: TC
Location: 11449 - 12801 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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