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Cluster: Rep_3430_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3430_c_2 Rep_3430_c_2_12 16806 18104 + GT2
pfam Rep_3430_c_2 Rep_3430_c_2_13 18516 20108 - ABC1
NULL(UNKNOWN) Rep_3430_c_2 Rep_3430_c_2_14 20101 20406 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3430_c_2 Rep_3430_c_2_15 20666 21520 + 3.A.1.3.28
TC Rep_3430_c_2 Rep_3430_c_2_16 21558 22208 + 3.A.1.3.14
TC Rep_3430_c_2 Rep_3430_c_2_17 22223 23032 + 3.A.1.3.14
NULL(UNKNOWN) Rep_3430_c_2 Rep_3430_c_2_18 23498 24238 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3430_c_2 Rep_3430_c_2_19 24231 24935 + 2.A.88.8.2
Gene ID: Rep_3430_c_2_12
Type: CAZyme
Location: 16806 - 18104 (+)
Gene ID: Rep_3430_c_2_13
Type: pfam
Location: 18516 - 20108 (-)
Gene ID: Rep_3430_c_2_14
Type:
Location: 20101 - 20406 (-)
Gene ID: Rep_3430_c_2_15
Type: TC
Location: 20666 - 21520 (+)
Gene ID: Rep_3430_c_2_16
Type: TC
Location: 21558 - 22208 (+)
Gene ID: Rep_3430_c_2_17
Type: TC
Location: 22223 - 23032 (+)
Gene ID: Rep_3430_c_2_18
Type:
Location: 23498 - 24238 (+)
Gene ID: Rep_3430_c_2_19
Type: TC
Location: 24231 - 24935 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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