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Cluster: Rep_342_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_342_c_23 Rep_342_c_23_5 5842 7053 + 1.B.6.1.6
TC Rep_342_c_23 Rep_342_c_23_6 7201 8412 + 1.B.6.1.6
pfam Rep_342_c_23 Rep_342_c_23_7 8600 10618 + BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 | HHH_5 | HHH_5 | Nlig-Ia
pfam Rep_342_c_23 Rep_342_c_23_8 10696 11280 + OMP_b-brl | Phenol_MetA_deg | OMP_b-brl_2
TC Rep_342_c_23 Rep_342_c_23_9 11316 14000 + 3.A.3.2.42
CAZyme Rep_342_c_23 Rep_342_c_23_10 14031 15056 - GT2
pfam Rep_342_c_23 Rep_342_c_23_11 15034 15993 - Lip_A_acyltrans
pfam Rep_342_c_23 Rep_342_c_23_12 15990 17303 - UPF0004 | Radical_SAM
TC Rep_342_c_23 Rep_342_c_23_13 17573 19237 + 4.C.1.1.4
peptidase Rep_342_c_23 Rep_342_c_23_14 19398 20396 + M28.UNW
pfam Rep_342_c_23 Rep_342_c_23_15 20651 21217 + SufE
TC Rep_342_c_23 Rep_342_c_23_16 21236 22945 + 2.A.17.1.6
Gene ID: Rep_342_c_23_5
Type: TC
Location: 5842 - 7053 (+)
Gene ID: Rep_342_c_23_6
Type: TC
Location: 7201 - 8412 (+)
Gene ID: Rep_342_c_23_7
Type: pfam
Location: 8600 - 10618 (+)
Gene ID: Rep_342_c_23_8
Type: pfam
Location: 10696 - 11280 (+)
Gene ID: Rep_342_c_23_9
Type: TC
Location: 11316 - 14000 (+)
Gene ID: Rep_342_c_23_10
Type: CAZyme
Location: 14031 - 15056 (-)
Gene ID: Rep_342_c_23_11
Type: pfam
Location: 15034 - 15993 (-)
Gene ID: Rep_342_c_23_12
Type: pfam
Location: 15990 - 17303 (-)
Gene ID: Rep_342_c_23_13
Type: TC
Location: 17573 - 19237 (+)
Gene ID: Rep_342_c_23_14
Type: peptidase
Location: 19398 - 20396 (+)
Gene ID: Rep_342_c_23_15
Type: pfam
Location: 20651 - 21217 (+)
Gene ID: Rep_342_c_23_16
Type: TC
Location: 21236 - 22945 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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