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Cluster: Rep_342_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_342_c_12 Rep_342_c_12_14 14608 16029 - GH13_28
pfam Rep_342_c_12 Rep_342_c_12_15 16390 17493 - MMR_HSR1 | FeoB_N | YchF-GTPase_C
pfam Rep_342_c_12 Rep_342_c_12_16 17701 18576 - PNP_UDP_1
TC Rep_342_c_12 Rep_342_c_12_17 18634 19752 - 3.A.11.1.3
pfam Rep_342_c_12 Rep_342_c_12_18 19780 20220 - 4HBT | 4HBT_2
pfam Rep_342_c_12 Rep_342_c_12_19 20273 21295 - ROK
TC Rep_342_c_12 Rep_342_c_12_20 21395 22477 + 1.A.23.2.1
pfam Rep_342_c_12 Rep_342_c_12_21 22507 23061 + Isochorismatase
pfam Rep_342_c_12 Rep_342_c_12_22 23522 25243 + DHH | DHHA1 | RecJ_OB
TC Rep_342_c_12 Rep_342_c_12_23 25261 27159 + 2.A.16.2.2
CAZyme Rep_342_c_12 Rep_342_c_12_24 27428 29128 - GT83
Gene ID: Rep_342_c_12_14
Type: CAZyme
Location: 14608 - 16029 (-)
Gene ID: Rep_342_c_12_15
Type: pfam
Location: 16390 - 17493 (-)
Gene ID: Rep_342_c_12_16
Type: pfam
Location: 17701 - 18576 (-)
Gene ID: Rep_342_c_12_17
Type: TC
Location: 18634 - 19752 (-)
Gene ID: Rep_342_c_12_18
Type: pfam
Location: 19780 - 20220 (-)
Gene ID: Rep_342_c_12_19
Type: pfam
Location: 20273 - 21295 (-)
Gene ID: Rep_342_c_12_20
Type: TC
Location: 21395 - 22477 (+)
Gene ID: Rep_342_c_12_21
Type: pfam
Location: 22507 - 23061 (+)
Gene ID: Rep_342_c_12_22
Type: pfam
Location: 23522 - 25243 (+)
Gene ID: Rep_342_c_12_23
Type: TC
Location: 25261 - 27159 (+)
Gene ID: Rep_342_c_12_24
Type: CAZyme
Location: 27428 - 29128 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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