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Cluster: Rep_342_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_342_c_9 Rep_342_c_9_11 12448 14997 + GH84
NULL(UNKNOWN) Rep_342_c_9 Rep_342_c_9_12 15032 15166 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_342_c_9 Rep_342_c_9_13 15244 16413 + 2.A.6.2.47
TC Rep_342_c_9 Rep_342_c_9_14 16470 19838 + 2.A.6.2.22
TC Rep_342_c_9 Rep_342_c_9_15 19813 21231 + 2.A.6.2.44
pfam Rep_342_c_9 Rep_342_c_9_16 21255 22043 + Acetyltransf_11
CAZyme Rep_342_c_9 Rep_342_c_9_17 22233 26939 + GH2
NULL(UNKNOWN) Rep_342_c_9 Rep_342_c_9_18 27008 27400 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_342_c_9 Rep_342_c_9_19 27597 30398 + 1.C.105.2.12
Gene ID: Rep_342_c_9_11
Type: CAZyme
Location: 12448 - 14997 (+)
Gene ID: Rep_342_c_9_12
Type:
Location: 15032 - 15166 (+)
Gene ID: Rep_342_c_9_13
Type: TC
Location: 15244 - 16413 (+)
Gene ID: Rep_342_c_9_14
Type: TC
Location: 16470 - 19838 (+)
Gene ID: Rep_342_c_9_15
Type: TC
Location: 19813 - 21231 (+)
Gene ID: Rep_342_c_9_16
Type: pfam
Location: 21255 - 22043 (+)
Gene ID: Rep_342_c_9_17
Type: CAZyme
Location: 22233 - 26939 (+)
Gene ID: Rep_342_c_9_18
Type:
Location: 27008 - 27400 (-)
Gene ID: Rep_342_c_9_19
Type: TC
Location: 27597 - 30398 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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