dbCAN Logo

Cluster: Rep_342_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_342_c_6 Rep_342_c_6_24 27062 28057 + GH73
TC Rep_342_c_6 Rep_342_c_6_25 28059 29366 + 9.B.106.2.2
pfam Rep_342_c_6 Rep_342_c_6_26 29363 31318 + BACON | BACON | OMP_b-brl_2
NULL(UNKNOWN) Rep_342_c_6 Rep_342_c_6_27 31346 33331 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_342_c_6 Rep_342_c_6_28 33382 34863 + 1.I.1.1.3
pfam Rep_342_c_6 Rep_342_c_6_29 34873 36642 + WG_beta_rep
pfam Rep_342_c_6 Rep_342_c_6_30 36646 37431 + PP2C | PP2C_2
TC Rep_342_c_6 Rep_342_c_6_31 37602 38489 - 9.A.40.2.4
Gene ID: Rep_342_c_6_24
Type: CAZyme
Location: 27062 - 28057 (+)
Gene ID: Rep_342_c_6_25
Type: TC
Location: 28059 - 29366 (+)
Gene ID: Rep_342_c_6_26
Type: pfam
Location: 29363 - 31318 (+)
Gene ID: Rep_342_c_6_27
Type:
Location: 31346 - 33331 (+)
Gene ID: Rep_342_c_6_28
Type: TC
Location: 33382 - 34863 (+)
Gene ID: Rep_342_c_6_29
Type: pfam
Location: 34873 - 36642 (+)
Gene ID: Rep_342_c_6_30
Type: pfam
Location: 36646 - 37431 (+)
Gene ID: Rep_342_c_6_31
Type: TC
Location: 37602 - 38489 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List