Cluster: Rep_3422_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3422
- CGC Family ID: CGCFAM_01358
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_257 | 270133 | 273111 | + | GH2 |
| NULL(UNKNOWN) | Rep_3422_c_1 | Rep_3422_c_1_258 | 273119 | 273328 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3422_c_1 | Rep_3422_c_1_259 | 273571 | 275013 | + | 2.A.25.1.4 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_260 | 275204 | 276085 | + | 3.A.1.3.2 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_261 | 276171 | 276881 | + | 3.A.1.3.15 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_262 | 276865 | 277587 | + | 3.A.1.3.25 |
Gene ID: Rep_3422_c_1_257
Type: CAZyme
Location: 270133 - 273111 (+)
Type: CAZyme
Location: 270133 - 273111 (+)
Gene ID: Rep_3422_c_1_258
Type:
Location: 273119 - 273328 (-)
Type:
Location: 273119 - 273328 (-)
Gene ID: Rep_3422_c_1_259
Type: TC
Location: 273571 - 275013 (+)
Type: TC
Location: 273571 - 275013 (+)
Gene ID: Rep_3422_c_1_260
Type: TC
Location: 275204 - 276085 (+)
Type: TC
Location: 275204 - 276085 (+)
Gene ID: Rep_3422_c_1_261
Type: TC
Location: 276171 - 276881 (+)
Type: TC
Location: 276171 - 276881 (+)
Gene ID: Rep_3422_c_1_262
Type: TC
Location: 276865 - 277587 (+)
Type: TC
Location: 276865 - 277587 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.