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Cluster: Rep_3422_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3422_c_1 Rep_3422_c_1_1593 1768278 1769639 + GH29
TC Rep_3422_c_1 Rep_3422_c_1_1594 1769937 1770989 - 3.A.1.2.1
TC Rep_3422_c_1 Rep_3422_c_1_1595 1770991 1772490 - 3.A.1.2.6
STP Rep_3422_c_1 Rep_3422_c_1_1596 1772576 1773664 - Peripla_BP_1
pfam Rep_3422_c_1 Rep_3422_c_1_1597 1773708 1774628 - AP_endonuc_2
CAZyme Rep_3422_c_1 Rep_3422_c_1_1598 1774640 1775767 - GH179
TF Rep_3422_c_1 Rep_3422_c_1_1599 1775949 1776965 + LacI
TF Rep_3422_c_1 Rep_3422_c_1_1600 1777409 1777753 + PadR
TC Rep_3422_c_1 Rep_3422_c_1_1601 1777988 1779364 + 2.A.22.5.3
Gene ID: Rep_3422_c_1_1593
Type: CAZyme
Location: 1768278 - 1769639 (+)
Gene ID: Rep_3422_c_1_1594
Type: TC
Location: 1769937 - 1770989 (-)
Gene ID: Rep_3422_c_1_1595
Type: TC
Location: 1770991 - 1772490 (-)
Gene ID: Rep_3422_c_1_1596
Type: STP
Location: 1772576 - 1773664 (-)
Gene ID: Rep_3422_c_1_1597
Type: pfam
Location: 1773708 - 1774628 (-)
Gene ID: Rep_3422_c_1_1598
Type: CAZyme
Location: 1774640 - 1775767 (-)
Gene ID: Rep_3422_c_1_1599
Type: TF
Location: 1775949 - 1776965 (+)
Gene ID: Rep_3422_c_1_1600
Type: TF
Location: 1777409 - 1777753 (+)
Gene ID: Rep_3422_c_1_1601
Type: TC
Location: 1777988 - 1779364 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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