Cluster: Rep_3422_CGC32
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_3422
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1392 | 1540049 | 1541059 | - | GT2 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1393 | 1541106 | 1542296 | - | GT4 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1394 | 1542293 | 1543000 | - | GT32 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1395 | 1543028 | 1544074 | - | GT2 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1396 | 1544086 | 1544973 | - | GT2 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1397 | 1544966 | 1546060 | - | GT4 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1398 | 1546091 | 1547251 | - | 9.B.183.1.9 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1399 | 1547341 | 1548450 | - | GT4 |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1400 | 1548532 | 1549350 | - | HpcH_HpaI |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1401 | 1549356 | 1549991 | - | 9.B.18.1.3 |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1402 | 1550170 | 1551018 | + | VanZ |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1403 | 1551082 | 1551729 | - | Flavin_Reduct |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1404 | 1551742 | 1553061 | - | 2.A.1.84.3 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1405 | 1553271 | 1554686 | + | 2.A.2.1.1 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1406 | 1554727 | 1556970 | + | GH2 |
| peptidase | Rep_3422_c_1 | Rep_3422_c_1_1407 | 1557030 | 1558610 | - | S12.UPW |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1408 | 1558774 | 1560198 | - | 2.A.2.1.1 |
| TF | Rep_3422_c_1 | Rep_3422_c_1_1409 | 1560264 | 1561271 | - | HTH_5 |
| peptidase | Rep_3422_c_1 | Rep_3422_c_1_1410 | 1561382 | 1563022 | - | S12.UPW |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1411 | 1563404 | 1565302 | + | 9.B.18.2.1 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1412 | 1565299 | 1566675 | + | 2.A.38.4.3 |
| STP | Rep_3422_c_1 | Rep_3422_c_1_1413 | 1566691 | 1567332 | + | TrkA_C |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1414 | 1567482 | 1568243 | - | DUF218 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1415 | 1568320 | 1569273 | - | GT2 |
Gene ID: Rep_3422_c_1_1392
Type: CAZyme
Location: 1540049 - 1541059 (-)
Type: CAZyme
Location: 1540049 - 1541059 (-)
Gene ID: Rep_3422_c_1_1393
Type: CAZyme
Location: 1541106 - 1542296 (-)
Type: CAZyme
Location: 1541106 - 1542296 (-)
Gene ID: Rep_3422_c_1_1394
Type: CAZyme
Location: 1542293 - 1543000 (-)
Type: CAZyme
Location: 1542293 - 1543000 (-)
Gene ID: Rep_3422_c_1_1395
Type: CAZyme
Location: 1543028 - 1544074 (-)
Type: CAZyme
Location: 1543028 - 1544074 (-)
Gene ID: Rep_3422_c_1_1396
Type: CAZyme
Location: 1544086 - 1544973 (-)
Type: CAZyme
Location: 1544086 - 1544973 (-)
Gene ID: Rep_3422_c_1_1397
Type: CAZyme
Location: 1544966 - 1546060 (-)
Type: CAZyme
Location: 1544966 - 1546060 (-)
Gene ID: Rep_3422_c_1_1398
Type: TC
Location: 1546091 - 1547251 (-)
Type: TC
Location: 1546091 - 1547251 (-)
Gene ID: Rep_3422_c_1_1399
Type: CAZyme
Location: 1547341 - 1548450 (-)
Type: CAZyme
Location: 1547341 - 1548450 (-)
Gene ID: Rep_3422_c_1_1400
Type: pfam
Location: 1548532 - 1549350 (-)
Type: pfam
Location: 1548532 - 1549350 (-)
Gene ID: Rep_3422_c_1_1401
Type: TC
Location: 1549356 - 1549991 (-)
Type: TC
Location: 1549356 - 1549991 (-)
Gene ID: Rep_3422_c_1_1402
Type: pfam
Location: 1550170 - 1551018 (+)
Type: pfam
Location: 1550170 - 1551018 (+)
Gene ID: Rep_3422_c_1_1403
Type: pfam
Location: 1551082 - 1551729 (-)
Type: pfam
Location: 1551082 - 1551729 (-)
Gene ID: Rep_3422_c_1_1404
Type: TC
Location: 1551742 - 1553061 (-)
Type: TC
Location: 1551742 - 1553061 (-)
Gene ID: Rep_3422_c_1_1405
Type: TC
Location: 1553271 - 1554686 (+)
Type: TC
Location: 1553271 - 1554686 (+)
Gene ID: Rep_3422_c_1_1406
Type: CAZyme
Location: 1554727 - 1556970 (+)
Type: CAZyme
Location: 1554727 - 1556970 (+)
Gene ID: Rep_3422_c_1_1407
Type: peptidase
Location: 1557030 - 1558610 (-)
Type: peptidase
Location: 1557030 - 1558610 (-)
Gene ID: Rep_3422_c_1_1408
Type: TC
Location: 1558774 - 1560198 (-)
Type: TC
Location: 1558774 - 1560198 (-)
Gene ID: Rep_3422_c_1_1409
Type: TF
Location: 1560264 - 1561271 (-)
Type: TF
Location: 1560264 - 1561271 (-)
Gene ID: Rep_3422_c_1_1410
Type: peptidase
Location: 1561382 - 1563022 (-)
Type: peptidase
Location: 1561382 - 1563022 (-)
Gene ID: Rep_3422_c_1_1411
Type: TC
Location: 1563404 - 1565302 (+)
Type: TC
Location: 1563404 - 1565302 (+)
Gene ID: Rep_3422_c_1_1412
Type: TC
Location: 1565299 - 1566675 (+)
Type: TC
Location: 1565299 - 1566675 (+)
Gene ID: Rep_3422_c_1_1413
Type: STP
Location: 1566691 - 1567332 (+)
Type: STP
Location: 1566691 - 1567332 (+)
Gene ID: Rep_3422_c_1_1414
Type: pfam
Location: 1567482 - 1568243 (-)
Type: pfam
Location: 1567482 - 1568243 (-)
Gene ID: Rep_3422_c_1_1415
Type: CAZyme
Location: 1568320 - 1569273 (-)
Type: CAZyme
Location: 1568320 - 1569273 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.