Cluster: Rep_3422_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3422
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3422_c_0 | Rep_3422_c_0_352 | 355564 | 357369 | + | 3.A.1.111.2 |
| TC | Rep_3422_c_0 | Rep_3422_c_0_353 | 357366 | 359189 | + | 3.A.1.106.1 |
| pfam | Rep_3422_c_0 | Rep_3422_c_0_354 | 359241 | 359750 | - | dUTPase |
| CAZyme | Rep_3422_c_0 | Rep_3422_c_0_355 | 359762 | 361252 | - | GH30_4 |
| pfam | Rep_3422_c_0 | Rep_3422_c_0_356 | 361276 | 362274 | - | Asparaginase |
| pfam | Rep_3422_c_0 | Rep_3422_c_0_357 | 362271 | 362747 | - | CinA |
| TC | Rep_3422_c_0 | Rep_3422_c_0_358 | 362909 | 364381 | + | 2.A.2.3.2 |
Gene ID: Rep_3422_c_0_352
Type: TC
Location: 355564 - 357369 (+)
Type: TC
Location: 355564 - 357369 (+)
Gene ID: Rep_3422_c_0_353
Type: TC
Location: 357366 - 359189 (+)
Type: TC
Location: 357366 - 359189 (+)
Gene ID: Rep_3422_c_0_354
Type: pfam
Location: 359241 - 359750 (-)
Type: pfam
Location: 359241 - 359750 (-)
Gene ID: Rep_3422_c_0_355
Type: CAZyme
Location: 359762 - 361252 (-)
Type: CAZyme
Location: 359762 - 361252 (-)
Gene ID: Rep_3422_c_0_356
Type: pfam
Location: 361276 - 362274 (-)
Type: pfam
Location: 361276 - 362274 (-)
Gene ID: Rep_3422_c_0_357
Type: pfam
Location: 362271 - 362747 (-)
Type: pfam
Location: 362271 - 362747 (-)
Gene ID: Rep_3422_c_0_358
Type: TC
Location: 362909 - 364381 (+)
Type: TC
Location: 362909 - 364381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.