Cluster: Rep_3422_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3422
- CGC Family ID: CGCFAM_10610
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3422_c_1 | Rep_3422_c_1_1248 | 1390728 | 1391795 | - | 2.A.20.1.5 |
| NULL(UNKNOWN) | Rep_3422_c_1 | Rep_3422_c_1_1249 | 1391987 | 1392895 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1250 | 1393079 | 1395604 | - | GH2 |
| TF | Rep_3422_c_1 | Rep_3422_c_1_1251 | 1395824 | 1396645 | + | HTH_AraC | HTH_AraC |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1252 | 1396631 | 1397590 | - | Exo_endo_phos |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1253 | 1397647 | 1398582 | - | 1.A.35.3.2 |
Gene ID: Rep_3422_c_1_1248
Type: TC
Location: 1390728 - 1391795 (-)
Type: TC
Location: 1390728 - 1391795 (-)
Gene ID: Rep_3422_c_1_1249
Type:
Location: 1391987 - 1392895 (-)
Type:
Location: 1391987 - 1392895 (-)
Gene ID: Rep_3422_c_1_1250
Type: CAZyme
Location: 1393079 - 1395604 (-)
Type: CAZyme
Location: 1393079 - 1395604 (-)
Gene ID: Rep_3422_c_1_1251
Type: TF
Location: 1395824 - 1396645 (+)
Type: TF
Location: 1395824 - 1396645 (+)
Gene ID: Rep_3422_c_1_1252
Type: pfam
Location: 1396631 - 1397590 (-)
Type: pfam
Location: 1396631 - 1397590 (-)
Gene ID: Rep_3422_c_1_1253
Type: TC
Location: 1397647 - 1398582 (-)
Type: TC
Location: 1397647 - 1398582 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.