Cluster: Rep_3422_CGC25
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_3422
- CGC Family ID: CGCFAM_10952
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1215 | 1343807 | 1345945 | - | GH141 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1216 | 1345980 | 1348361 | - | GH95 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1217 | 1348394 | 1349635 | - | GH109 |
| NULL(UNKNOWN) | Rep_3422_c_1 | Rep_3422_c_1_1218 | 1349628 | 1351781 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1219 | 1351795 | 1354752 | - | GH2 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1220 | 1354790 | 1356334 | - | GH39 |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1221 | 1356367 | 1357224 | - | LRR_5 | LRR_5 |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1222 | 1357240 | 1358931 | - | MFS_1 | MFS_2 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1223 | 1358961 | 1360748 | - | GH35 |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1224 | 1360763 | 1363060 | - | GH182 |
| TF | Rep_3422_c_1 | Rep_3422_c_1_1225 | 1363185 | 1364198 | - | LacI |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1226 | 1364327 | 1366423 | + | GH3 |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_1227 | 1366665 | 1367813 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1228 | 1368473 | 1369894 | - | 2.A.66.1.25 |
Gene ID: Rep_3422_c_1_1215
Type: CAZyme
Location: 1343807 - 1345945 (-)
Type: CAZyme
Location: 1343807 - 1345945 (-)
Gene ID: Rep_3422_c_1_1216
Type: CAZyme
Location: 1345980 - 1348361 (-)
Type: CAZyme
Location: 1345980 - 1348361 (-)
Gene ID: Rep_3422_c_1_1217
Type: CAZyme
Location: 1348394 - 1349635 (-)
Type: CAZyme
Location: 1348394 - 1349635 (-)
Gene ID: Rep_3422_c_1_1218
Type:
Location: 1349628 - 1351781 (-)
Type:
Location: 1349628 - 1351781 (-)
Gene ID: Rep_3422_c_1_1219
Type: CAZyme
Location: 1351795 - 1354752 (-)
Type: CAZyme
Location: 1351795 - 1354752 (-)
Gene ID: Rep_3422_c_1_1220
Type: CAZyme
Location: 1354790 - 1356334 (-)
Type: CAZyme
Location: 1354790 - 1356334 (-)
Gene ID: Rep_3422_c_1_1221
Type: pfam
Location: 1356367 - 1357224 (-)
Type: pfam
Location: 1356367 - 1357224 (-)
Gene ID: Rep_3422_c_1_1222
Type: pfam
Location: 1357240 - 1358931 (-)
Type: pfam
Location: 1357240 - 1358931 (-)
Gene ID: Rep_3422_c_1_1223
Type: CAZyme
Location: 1358961 - 1360748 (-)
Type: CAZyme
Location: 1358961 - 1360748 (-)
Gene ID: Rep_3422_c_1_1224
Type: CAZyme
Location: 1360763 - 1363060 (-)
Type: CAZyme
Location: 1360763 - 1363060 (-)
Gene ID: Rep_3422_c_1_1225
Type: TF
Location: 1363185 - 1364198 (-)
Type: TF
Location: 1363185 - 1364198 (-)
Gene ID: Rep_3422_c_1_1226
Type: CAZyme
Location: 1364327 - 1366423 (+)
Type: CAZyme
Location: 1364327 - 1366423 (+)
Gene ID: Rep_3422_c_1_1227
Type: pfam
Location: 1366665 - 1367813 (-)
Type: pfam
Location: 1366665 - 1367813 (-)
Gene ID: Rep_3422_c_1_1228
Type: TC
Location: 1368473 - 1369894 (-)
Type: TC
Location: 1368473 - 1369894 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.