Cluster: Rep_3422_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3422
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1094 | 1212646 | 1219011 | + | GH43_4 |
| NULL(UNKNOWN) | Rep_3422_c_1 | Rep_3422_c_1_1095 | 1219026 | 1219166 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_3422_c_1 | Rep_3422_c_1_1096 | 1219217 | 1220212 | - | LacI |
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_1097 | 1220391 | 1221770 | + | GH4 |
| STP | Rep_3422_c_1 | Rep_3422_c_1_1098 | 1221767 | 1222654 | + | PfkB |
| peptidase | Rep_3422_c_1 | Rep_3422_c_1_1099 | 1222664 | 1223635 | + | S09.UNC |
| TC | Rep_3422_c_1 | Rep_3422_c_1_1100 | 1223679 | 1225154 | + | 2.A.2.3.2 |
Gene ID: Rep_3422_c_1_1094
Type: CAZyme
Location: 1212646 - 1219011 (+)
Type: CAZyme
Location: 1212646 - 1219011 (+)
Gene ID: Rep_3422_c_1_1095
Type:
Location: 1219026 - 1219166 (+)
Type:
Location: 1219026 - 1219166 (+)
Gene ID: Rep_3422_c_1_1096
Type: TF
Location: 1219217 - 1220212 (-)
Type: TF
Location: 1219217 - 1220212 (-)
Gene ID: Rep_3422_c_1_1097
Type: CAZyme
Location: 1220391 - 1221770 (+)
Type: CAZyme
Location: 1220391 - 1221770 (+)
Gene ID: Rep_3422_c_1_1098
Type: STP
Location: 1221767 - 1222654 (+)
Type: STP
Location: 1221767 - 1222654 (+)
Gene ID: Rep_3422_c_1_1099
Type: peptidase
Location: 1222664 - 1223635 (+)
Type: peptidase
Location: 1222664 - 1223635 (+)
Gene ID: Rep_3422_c_1_1100
Type: TC
Location: 1223679 - 1225154 (+)
Type: TC
Location: 1223679 - 1225154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.