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Cluster: Rep_3422_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3422_c_1 Rep_3422_c_1_1026 1132032 1133330 + GH33
pfam Rep_3422_c_1 Rep_3422_c_1_1027 1133347 1135824 + MFS_2
pfam Rep_3422_c_1 Rep_3422_c_1_1028 1136026 1136637 + NEAT
TC Rep_3422_c_1 Rep_3422_c_1_1029 1136662 1138404 + 3.A.1.106.12
NULL(UNKNOWN) Rep_3422_c_1 Rep_3422_c_1_1030 1138401 1138844 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3422_c_1 Rep_3422_c_1_1031 1138896 1140062 + 3.A.1.106.11
pfam Rep_3422_c_1 Rep_3422_c_1_1032 1140062 1140412 + YgbA_NO
TC Rep_3422_c_1 Rep_3422_c_1_1033 1140402 1140980 + 3.A.1.18.3
TC Rep_3422_c_1 Rep_3422_c_1_1034 1140973 1141656 + 3.A.1.18.3
TC Rep_3422_c_1 Rep_3422_c_1_1035 1141653 1143077 + 3.A.1.18.3
CAZyme Rep_3422_c_1 Rep_3422_c_1_1036 1143144 1145138 - GH18
Gene ID: Rep_3422_c_1_1026
Type: CAZyme
Location: 1132032 - 1133330 (+)
Gene ID: Rep_3422_c_1_1027
Type: pfam
Location: 1133347 - 1135824 (+)
Gene ID: Rep_3422_c_1_1028
Type: pfam
Location: 1136026 - 1136637 (+)
Gene ID: Rep_3422_c_1_1029
Type: TC
Location: 1136662 - 1138404 (+)
Gene ID: Rep_3422_c_1_1030
Type:
Location: 1138401 - 1138844 (+)
Gene ID: Rep_3422_c_1_1031
Type: TC
Location: 1138896 - 1140062 (+)
Gene ID: Rep_3422_c_1_1032
Type: pfam
Location: 1140062 - 1140412 (+)
Gene ID: Rep_3422_c_1_1033
Type: TC
Location: 1140402 - 1140980 (+)
Gene ID: Rep_3422_c_1_1034
Type: TC
Location: 1140973 - 1141656 (+)
Gene ID: Rep_3422_c_1_1035
Type: TC
Location: 1141653 - 1143077 (+)
Gene ID: Rep_3422_c_1_1036
Type: CAZyme
Location: 1143144 - 1145138 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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