Cluster: Rep_3422_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3422
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3422_c_1 | Rep_3422_c_1_971 | 1071663 | 1074344 | - | GH95 |
| STP | Rep_3422_c_1 | Rep_3422_c_1_972 | 1074434 | 1075105 | + | AraC_binding |
| pfam | Rep_3422_c_1 | Rep_3422_c_1_973 | 1075729 | 1076745 | + | ABC_sub_bind |
| TC | Rep_3422_c_1 | Rep_3422_c_1_974 | 1076771 | 1077700 | + | 3.A.1.34.1 |
| TC | Rep_3422_c_1 | Rep_3422_c_1_975 | 1077687 | 1078460 | + | 3.A.1.34.1 |
Gene ID: Rep_3422_c_1_971
Type: CAZyme
Location: 1071663 - 1074344 (-)
Type: CAZyme
Location: 1071663 - 1074344 (-)
Gene ID: Rep_3422_c_1_972
Type: STP
Location: 1074434 - 1075105 (+)
Type: STP
Location: 1074434 - 1075105 (+)
Gene ID: Rep_3422_c_1_973
Type: pfam
Location: 1075729 - 1076745 (+)
Type: pfam
Location: 1075729 - 1076745 (+)
Gene ID: Rep_3422_c_1_974
Type: TC
Location: 1076771 - 1077700 (+)
Type: TC
Location: 1076771 - 1077700 (+)
Gene ID: Rep_3422_c_1_975
Type: TC
Location: 1077687 - 1078460 (+)
Type: TC
Location: 1077687 - 1078460 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.