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Cluster: Rep_3422_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3422_c_0 Rep_3422_c_0_326 327444 328664 + 3.A.1.4.10
TC Rep_3422_c_0 Rep_3422_c_0_327 328959 329840 + 3.A.1.4.10
TC Rep_3422_c_0 Rep_3422_c_0_328 329854 330939 + 3.A.1.4.8
TC Rep_3422_c_0 Rep_3422_c_0_329 330939 331697 + 3.A.1.4.10
TC Rep_3422_c_0 Rep_3422_c_0_330 331710 332420 + 3.A.1.4.10
TC Rep_3422_c_0 Rep_3422_c_0_331 332443 333060 + 2.A.115.2.14
peptidase Rep_3422_c_0 Rep_3422_c_0_332 333171 334133 + S09.UPC
TC Rep_3422_c_0 Rep_3422_c_0_333 334143 336359 + 3.A.7.16.1
TC Rep_3422_c_0 Rep_3422_c_0_334 336396 337424 + 1.A.33.1.5
pfam Rep_3422_c_0 Rep_3422_c_0_335 337421 337909 + CobA_CobO_BtuR
NULL(UNKNOWN) Rep_3422_c_0 Rep_3422_c_0_336 337924 338796 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3422_c_0 Rep_3422_c_0_337 338769 340328 + 3.A.1.32.2
pfam Rep_3422_c_0 Rep_3422_c_0_338 340325 341008 + ECF-ribofla_trS
NULL(UNKNOWN) Rep_3422_c_0 Rep_3422_c_0_339 341028 341162 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3422_c_0 Rep_3422_c_0_340 341320 343275 + GH127
pfam Rep_3422_c_0 Rep_3422_c_0_341 343403 343783 + OAD_gamma
TC Rep_3422_c_0 Rep_3422_c_0_342 343799 345007 + 3.B.1.1.2
Gene ID: Rep_3422_c_0_326
Type: TC
Location: 327444 - 328664 (+)
Gene ID: Rep_3422_c_0_327
Type: TC
Location: 328959 - 329840 (+)
Gene ID: Rep_3422_c_0_328
Type: TC
Location: 329854 - 330939 (+)
Gene ID: Rep_3422_c_0_329
Type: TC
Location: 330939 - 331697 (+)
Gene ID: Rep_3422_c_0_330
Type: TC
Location: 331710 - 332420 (+)
Gene ID: Rep_3422_c_0_331
Type: TC
Location: 332443 - 333060 (+)
Gene ID: Rep_3422_c_0_332
Type: peptidase
Location: 333171 - 334133 (+)
Gene ID: Rep_3422_c_0_333
Type: TC
Location: 334143 - 336359 (+)
Gene ID: Rep_3422_c_0_334
Type: TC
Location: 336396 - 337424 (+)
Gene ID: Rep_3422_c_0_335
Type: pfam
Location: 337421 - 337909 (+)
Gene ID: Rep_3422_c_0_336
Type:
Location: 337924 - 338796 (+)
Gene ID: Rep_3422_c_0_337
Type: TC
Location: 338769 - 340328 (+)
Gene ID: Rep_3422_c_0_338
Type: pfam
Location: 340325 - 341008 (+)
Gene ID: Rep_3422_c_0_339
Type:
Location: 341028 - 341162 (-)
Gene ID: Rep_3422_c_0_340
Type: CAZyme
Location: 341320 - 343275 (+)
Gene ID: Rep_3422_c_0_341
Type: pfam
Location: 343403 - 343783 (+)
Gene ID: Rep_3422_c_0_342
Type: TC
Location: 343799 - 345007 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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