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Cluster: Rep_3422_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3422_c_1 Rep_3422_c_1_477 514019 514387 + 2.A.7.1.1
TC Rep_3422_c_1 Rep_3422_c_1_478 514571 515047 + 3.D.1.5.1
TC Rep_3422_c_1 Rep_3422_c_1_479 515040 516926 + 3.D.1.5.1
STP Rep_3422_c_1 Rep_3422_c_1_480 516929 518620 + Fer4
peptidase Rep_3422_c_1 Rep_3422_c_1_481 518722 519426 - S26.UPA
CAZyme Rep_3422_c_1 Rep_3422_c_1_482 519445 521772 - GH36
pfam Rep_3422_c_1 Rep_3422_c_1_483 521775 522032 - TSCPD
CAZyme Rep_3422_c_1 Rep_3422_c_1_484 522309 523322 + GH177
Gene ID: Rep_3422_c_1_477
Type: TC
Location: 514019 - 514387 (+)
Gene ID: Rep_3422_c_1_478
Type: TC
Location: 514571 - 515047 (+)
Gene ID: Rep_3422_c_1_479
Type: TC
Location: 515040 - 516926 (+)
Gene ID: Rep_3422_c_1_480
Type: STP
Location: 516929 - 518620 (+)
Gene ID: Rep_3422_c_1_481
Type: peptidase
Location: 518722 - 519426 (-)
Gene ID: Rep_3422_c_1_482
Type: CAZyme
Location: 519445 - 521772 (-)
Gene ID: Rep_3422_c_1_483
Type: pfam
Location: 521775 - 522032 (-)
Gene ID: Rep_3422_c_1_484
Type: CAZyme
Location: 522309 - 523322 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3422_c_1_479 vegetarian > vegan 1.07069 0.01287

🧭 Explore Read Mapping of CGC

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