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Cluster: Rep_340_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_340_c_0 Rep_340_c_0_1575 1788031 1789935 - GH85
pfam Rep_340_c_0 Rep_340_c_0_1576 1790177 1792672 - Laminin_G_3
NULL(UNKNOWN) Rep_340_c_0 Rep_340_c_0_1577 1792669 1793043 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_340_c_0 Rep_340_c_0_1578 1793196 1794146 - GH85
pfam Rep_340_c_0 Rep_340_c_0_1579 1794277 1795506 + DDE_Tnp_1 | DDE_Tnp_2 | DDE_Tnp_1_3 | DUF4372
pfam Rep_340_c_0 Rep_340_c_0_1580 1795708 1797699 - Big_2
TC Rep_340_c_0 Rep_340_c_0_1581 1797718 1799493 - 8.A.46.2.1
TC Rep_340_c_0 Rep_340_c_0_1582 1799556 1802822 - 1.B.14.6.13
TC Rep_340_c_0 Rep_340_c_0_1583 1803537 1805198 + 9.B.174.1.1
Gene ID: Rep_340_c_0_1575
Type: CAZyme
Location: 1788031 - 1789935 (-)
Gene ID: Rep_340_c_0_1576
Type: pfam
Location: 1790177 - 1792672 (-)
Gene ID: Rep_340_c_0_1577
Type:
Location: 1792669 - 1793043 (-)
Gene ID: Rep_340_c_0_1578
Type: CAZyme
Location: 1793196 - 1794146 (-)
Gene ID: Rep_340_c_0_1579
Type: pfam
Location: 1794277 - 1795506 (+)
Gene ID: Rep_340_c_0_1580
Type: pfam
Location: 1795708 - 1797699 (-)
Gene ID: Rep_340_c_0_1581
Type: TC
Location: 1797718 - 1799493 (-)
Gene ID: Rep_340_c_0_1582
Type: TC
Location: 1799556 - 1802822 (-)
Gene ID: Rep_340_c_0_1583
Type: TC
Location: 1803537 - 1805198 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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