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Cluster: Rep_340_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_340_c_0 Rep_340_c_0_1194 1346167 1347294 - GT19
TC Rep_340_c_0 Rep_340_c_0_1195 1347411 1349228 + 3.A.1.106.1
TC Rep_340_c_0 Rep_340_c_0_1196 1349564 1351219 + 2.A.81.1.2
pfam Rep_340_c_0 Rep_340_c_0_1197 1351295 1351591 - Thioredoxin | Thioredoxin_2 | TraF
pfam Rep_340_c_0 Rep_340_c_0_1198 1351619 1351915 - Thioredoxin | Thioredoxin_2 | TraF | Thioredoxin_8
CAZyme Rep_340_c_0 Rep_340_c_0_1199 1352194 1355499 + GH84
sulfatase Rep_340_c_0 Rep_340_c_0_1200 1355555 1357102 - S1_16
TC Rep_340_c_0 Rep_340_c_0_1201 1357122 1358807 - 3.A.1.120.6
Gene ID: Rep_340_c_0_1194
Type: CAZyme
Location: 1346167 - 1347294 (-)
Gene ID: Rep_340_c_0_1195
Type: TC
Location: 1347411 - 1349228 (+)
Gene ID: Rep_340_c_0_1196
Type: TC
Location: 1349564 - 1351219 (+)
Gene ID: Rep_340_c_0_1197
Type: pfam
Location: 1351295 - 1351591 (-)
Gene ID: Rep_340_c_0_1198
Type: pfam
Location: 1351619 - 1351915 (-)
Gene ID: Rep_340_c_0_1199
Type: CAZyme
Location: 1352194 - 1355499 (+)
Gene ID: Rep_340_c_0_1200
Type: sulfatase
Location: 1355555 - 1357102 (-)
Gene ID: Rep_340_c_0_1201
Type: TC
Location: 1357122 - 1358807 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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