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Cluster: Rep_340_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_340_c_0 Rep_340_c_0_645 741936 742403 - 8.A.58.2.2
pfam Rep_340_c_0 Rep_340_c_0_646 742419 743012 - RuvC
pfam Rep_340_c_0 Rep_340_c_0_647 743009 743320 - DUF4286
CAZyme Rep_340_c_0 Rep_340_c_0_648 743317 744078 - GT2
TC Rep_340_c_0 Rep_340_c_0_649 744097 744990 - 1.B.42.1.2
pfam Rep_340_c_0 Rep_340_c_0_650 744999 745628 - PRK
pfam Rep_340_c_0 Rep_340_c_0_651 745791 746633 + AP_endonuc_2
TC Rep_340_c_0 Rep_340_c_0_652 746679 748031 + 2.A.2.6.2
Gene ID: Rep_340_c_0_645
Type: TC
Location: 741936 - 742403 (-)
Gene ID: Rep_340_c_0_646
Type: pfam
Location: 742419 - 743012 (-)
Gene ID: Rep_340_c_0_647
Type: pfam
Location: 743009 - 743320 (-)
Gene ID: Rep_340_c_0_648
Type: CAZyme
Location: 743317 - 744078 (-)
Gene ID: Rep_340_c_0_649
Type: TC
Location: 744097 - 744990 (-)
Gene ID: Rep_340_c_0_650
Type: pfam
Location: 744999 - 745628 (-)
Gene ID: Rep_340_c_0_651
Type: pfam
Location: 745791 - 746633 (+)
Gene ID: Rep_340_c_0_652
Type: TC
Location: 746679 - 748031 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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