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Cluster: Rep_3396_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_7 Rep_3396_c_7_1 3 746 + 3.A.1.122.14
pfam Rep_3396_c_7 Rep_3396_c_7_2 799 2859 + CARDB
TC Rep_3396_c_7 Rep_3396_c_7_3 2856 4184 + 3.A.1.122.2
pfam Rep_3396_c_7 Rep_3396_c_7_4 4472 5740 + MOFRL | DUF4147
pfam Rep_3396_c_7 Rep_3396_c_7_5 5843 6622 + SseB | SseB_C
CAZyme Rep_3396_c_7 Rep_3396_c_7_6 6688 7815 - CE9
TF Rep_3396_c_7 Rep_3396_c_7_7 8004 9866 + MarR
TC Rep_3396_c_7 Rep_3396_c_7_8 9880 11448 + 2.A.15.2.3
Gene ID: Rep_3396_c_7_1
Type: TC
Location: 3 - 746 (+)
Gene ID: Rep_3396_c_7_2
Type: pfam
Location: 799 - 2859 (+)
Gene ID: Rep_3396_c_7_3
Type: TC
Location: 2856 - 4184 (+)
Gene ID: Rep_3396_c_7_4
Type: pfam
Location: 4472 - 5740 (+)
Gene ID: Rep_3396_c_7_5
Type: pfam
Location: 5843 - 6622 (+)
Gene ID: Rep_3396_c_7_6
Type: CAZyme
Location: 6688 - 7815 (-)
Gene ID: Rep_3396_c_7_7
Type: TF
Location: 8004 - 9866 (+)
Gene ID: Rep_3396_c_7_8
Type: TC
Location: 9880 - 11448 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3396_c_7_3 vegetarian > vegan 1.29705 0.00229

🧭 Explore Read Mapping of CGC

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