Cluster: Rep_3396_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3396_c_6 | Rep_3396_c_6_49 | 56212 | 57381 | - | GH177 |
| pfam | Rep_3396_c_6 | Rep_3396_c_6_50 | 57394 | 58155 | - | AP_endonuc_2 |
| STP | Rep_3396_c_6 | Rep_3396_c_6_51 | 58286 | 58861 | - | Nitroreductase |
| TC | Rep_3396_c_6 | Rep_3396_c_6_52 | 58863 | 60128 | - | 2.A.86.1.8 |
| pfam | Rep_3396_c_6 | Rep_3396_c_6_53 | 60125 | 60862 | - | SIR2 |
| pfam | Rep_3396_c_6 | Rep_3396_c_6_54 | 60864 | 61625 | - | Exo_endo_phos |
| TC | Rep_3396_c_6 | Rep_3396_c_6_55 | 61864 | 63597 | + | 3.A.1.135.5 |
Gene ID: Rep_3396_c_6_49
Type: CAZyme
Location: 56212 - 57381 (-)
Type: CAZyme
Location: 56212 - 57381 (-)
Gene ID: Rep_3396_c_6_50
Type: pfam
Location: 57394 - 58155 (-)
Type: pfam
Location: 57394 - 58155 (-)
Gene ID: Rep_3396_c_6_51
Type: STP
Location: 58286 - 58861 (-)
Type: STP
Location: 58286 - 58861 (-)
Gene ID: Rep_3396_c_6_52
Type: TC
Location: 58863 - 60128 (-)
Type: TC
Location: 58863 - 60128 (-)
Gene ID: Rep_3396_c_6_53
Type: pfam
Location: 60125 - 60862 (-)
Type: pfam
Location: 60125 - 60862 (-)
Gene ID: Rep_3396_c_6_54
Type: pfam
Location: 60864 - 61625 (-)
Type: pfam
Location: 60864 - 61625 (-)
Gene ID: Rep_3396_c_6_55
Type: TC
Location: 61864 - 63597 (+)
Type: TC
Location: 61864 - 63597 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3396_c_6_52 | vegetarian > vegan | 1.14243 | 0.00229 |