Cluster: Rep_3396_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3396_c_5 | Rep_3396_c_5_37 | 37229 | 37459 | + | 3.D.1.6.4 |
| NULL(UNKNOWN) | Rep_3396_c_5 | Rep_3396_c_5_38 | 37656 | 37808 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3396_c_5 | Rep_3396_c_5_39 | 37877 | 38848 | - | GH18 |
| pfam | Rep_3396_c_5 | Rep_3396_c_5_40 | 38845 | 40608 | - | ILVD_EDD_N | ILV_EDD_C |
| CAZyme | Rep_3396_c_5 | Rep_3396_c_5_41 | 40665 | 41657 | - | GH130_7 |
Gene ID: Rep_3396_c_5_37
Type: TC
Location: 37229 - 37459 (+)
Type: TC
Location: 37229 - 37459 (+)
Gene ID: Rep_3396_c_5_38
Type:
Location: 37656 - 37808 (+)
Type:
Location: 37656 - 37808 (+)
Gene ID: Rep_3396_c_5_39
Type: CAZyme
Location: 37877 - 38848 (-)
Type: CAZyme
Location: 37877 - 38848 (-)
Gene ID: Rep_3396_c_5_40
Type: pfam
Location: 38845 - 40608 (-)
Type: pfam
Location: 38845 - 40608 (-)
Gene ID: Rep_3396_c_5_41
Type: CAZyme
Location: 40665 - 41657 (-)
Type: CAZyme
Location: 40665 - 41657 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3396_c_5_37 | vegetarian > vegan | 2.17489 | 0.00229 |
| Rep_3396_c_5_38 | vegetarian > vegan | 1.72654 | 0.00229 |