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Cluster: Rep_3396_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_58 Rep_3396_c_58_6 7831 10011 + 9.B.34.1.1
CAZyme Rep_3396_c_58 Rep_3396_c_58_7 10184 12112 + GH78
TF Rep_3396_c_58 Rep_3396_c_58_8 12252 12746 + 0044258
TC Rep_3396_c_58 Rep_3396_c_58_9 12736 13449 + 2.A.78.1.1
TC Rep_3396_c_58 Rep_3396_c_58_10 13446 13772 + 2.A.78.1.1
Gene ID: Rep_3396_c_58_6
Type: TC
Location: 7831 - 10011 (+)
Gene ID: Rep_3396_c_58_7
Type: CAZyme
Location: 10184 - 12112 (+)
Gene ID: Rep_3396_c_58_8
Type: TF
Location: 12252 - 12746 (+)
Gene ID: Rep_3396_c_58_9
Type: TC
Location: 12736 - 13449 (+)
Gene ID: Rep_3396_c_58_10
Type: TC
Location: 13446 - 13772 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3396_c_58_8 vegetarian > vegan 2.21014 0.00229

🧭 Explore Read Mapping of CGC

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