Cluster: Rep_3396_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3396_c_2 | Rep_3396_c_2_29 | 35079 | 35984 | - | 3.A.1.1.9 |
| TC | Rep_3396_c_2 | Rep_3396_c_2_30 | 36002 | 36898 | - | 3.A.1.1.10 |
| pfam | Rep_3396_c_2 | Rep_3396_c_2_31 | 37235 | 37708 | + | Ribonuc_L-PSP | YjgF_endoribonc |
| CAZyme | Rep_3396_c_2 | Rep_3396_c_2_32 | 37721 | 39412 | + | GH29 |
Gene ID: Rep_3396_c_2_29
Type: TC
Location: 35079 - 35984 (-)
Type: TC
Location: 35079 - 35984 (-)
Gene ID: Rep_3396_c_2_30
Type: TC
Location: 36002 - 36898 (-)
Type: TC
Location: 36002 - 36898 (-)
Gene ID: Rep_3396_c_2_31
Type: pfam
Location: 37235 - 37708 (+)
Type: pfam
Location: 37235 - 37708 (+)
Gene ID: Rep_3396_c_2_32
Type: CAZyme
Location: 37721 - 39412 (+)
Type: CAZyme
Location: 37721 - 39412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3396_c_2_29 | vegetarian > vegan | 1.00027 | 0.00229 |
| Rep_3396_c_2_31 | vegetarian > vegan | 1.33154 | 0.00229 |