Cluster: Rep_3396_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3396_c_51 | Rep_3396_c_51_3 | 3453 | 6065 | - | GH163 |
| TC | Rep_3396_c_51 | Rep_3396_c_51_4 | 6309 | 8111 | - | 3.A.1.1.10 |
| TC | Rep_3396_c_51 | Rep_3396_c_51_5 | 8220 | 9128 | - | 3.A.1.1.29 |
| TC | Rep_3396_c_51 | Rep_3396_c_51_6 | 9160 | 10143 | - | 3.A.1.1.10 |
Gene ID: Rep_3396_c_51_3
Type: CAZyme
Location: 3453 - 6065 (-)
Type: CAZyme
Location: 3453 - 6065 (-)
Gene ID: Rep_3396_c_51_4
Type: TC
Location: 6309 - 8111 (-)
Type: TC
Location: 6309 - 8111 (-)
Gene ID: Rep_3396_c_51_5
Type: TC
Location: 8220 - 9128 (-)
Type: TC
Location: 8220 - 9128 (-)
Gene ID: Rep_3396_c_51_6
Type: TC
Location: 9160 - 10143 (-)
Type: TC
Location: 9160 - 10143 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3396_c_51_3 | vegetarian > vegan | 3.04578 | 0.00229 |
| Rep_3396_c_51_4 | vegetarian > vegan | 1.43632 | 0.00229 |
| Rep_3396_c_51_5 | vegetarian > vegan | 3.63418 | 0.00229 |
| Rep_3396_c_51_6 | vegetarian > vegan | 1.57306 | 0.00229 |