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Cluster: Rep_3396_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_26 Rep_3396_c_26_11 10177 10653 - 3.A.2.2.2
TC Rep_3396_c_26 Rep_3396_c_26_12 10655 12529 - 3.A.2.2.2
NULL(UNKNOWN) Rep_3396_c_26 Rep_3396_c_26_13 12526 12834 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3396_c_26 Rep_3396_c_26_14 13224 13766 + Metallophos | Metallophos_2
CAZyme Rep_3396_c_26 Rep_3396_c_26_15 13964 15004 + GH179
pfam Rep_3396_c_26 Rep_3396_c_26_16 15019 15873 + AP_endonuc_2
CAZyme Rep_3396_c_26 Rep_3396_c_26_17 15878 17044 + CE9
pfam Rep_3396_c_26 Rep_3396_c_26_18 17041 18000 + ROK
peptidase Rep_3396_c_26 Rep_3396_c_26_19 18023 19177 + M20.UPW
TC Rep_3396_c_26 Rep_3396_c_26_20 19423 21789 - 3.A.3.23.2
Gene ID: Rep_3396_c_26_11
Type: TC
Location: 10177 - 10653 (-)
Gene ID: Rep_3396_c_26_12
Type: TC
Location: 10655 - 12529 (-)
Gene ID: Rep_3396_c_26_13
Type:
Location: 12526 - 12834 (-)
Gene ID: Rep_3396_c_26_14
Type: pfam
Location: 13224 - 13766 (+)
Gene ID: Rep_3396_c_26_15
Type: CAZyme
Location: 13964 - 15004 (+)
Gene ID: Rep_3396_c_26_16
Type: pfam
Location: 15019 - 15873 (+)
Gene ID: Rep_3396_c_26_17
Type: CAZyme
Location: 15878 - 17044 (+)
Gene ID: Rep_3396_c_26_18
Type: pfam
Location: 17041 - 18000 (+)
Gene ID: Rep_3396_c_26_19
Type: peptidase
Location: 18023 - 19177 (+)
Gene ID: Rep_3396_c_26_20
Type: TC
Location: 19423 - 21789 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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