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Cluster: Rep_3396_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_11 Rep_3396_c_11_32 30800 31324 - 1.A.34.1.1
TC Rep_3396_c_11 Rep_3396_c_11_33 31578 34280 - 3.A.3.2.21
TF Rep_3396_c_11 Rep_3396_c_11_34 34453 34977 + MarR
TC Rep_3396_c_11 Rep_3396_c_11_35 34970 36691 + 3.A.1.135.5
TC Rep_3396_c_11 Rep_3396_c_11_36 36709 38583 + 3.A.1.135.5
NULL(UNKNOWN) Rep_3396_c_11 Rep_3396_c_11_37 38736 39128 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3396_c_11 Rep_3396_c_11_38 39178 41442 - GH95
TF Rep_3396_c_11 Rep_3396_c_11_39 41454 42260 - HTH_AraC
CAZyme Rep_3396_c_11 Rep_3396_c_11_40 42413 43522 + GH179
TC Rep_3396_c_11 Rep_3396_c_11_41 43594 44301 - 3.A.1.24.5
TC Rep_3396_c_11 Rep_3396_c_11_42 44294 45304 - 3.A.1.24.2
TC Rep_3396_c_11 Rep_3396_c_11_43 45378 46223 - 3.A.1.24.5
Gene ID: Rep_3396_c_11_32
Type: TC
Location: 30800 - 31324 (-)
Gene ID: Rep_3396_c_11_33
Type: TC
Location: 31578 - 34280 (-)
Gene ID: Rep_3396_c_11_34
Type: TF
Location: 34453 - 34977 (+)
Gene ID: Rep_3396_c_11_35
Type: TC
Location: 34970 - 36691 (+)
Gene ID: Rep_3396_c_11_36
Type: TC
Location: 36709 - 38583 (+)
Gene ID: Rep_3396_c_11_37
Type:
Location: 38736 - 39128 (+)
Gene ID: Rep_3396_c_11_38
Type: CAZyme
Location: 39178 - 41442 (-)
Gene ID: Rep_3396_c_11_39
Type: TF
Location: 41454 - 42260 (-)
Gene ID: Rep_3396_c_11_40
Type: CAZyme
Location: 42413 - 43522 (+)
Gene ID: Rep_3396_c_11_41
Type: TC
Location: 43594 - 44301 (-)
Gene ID: Rep_3396_c_11_42
Type: TC
Location: 44294 - 45304 (-)
Gene ID: Rep_3396_c_11_43
Type: TC
Location: 45378 - 46223 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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