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Cluster: Rep_3394_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3394_c_32 Rep_3394_c_32_2 1676 3649 + GH20
NULL(UNKNOWN) Rep_3394_c_32 Rep_3394_c_32_3 3706 4860 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3394_c_32 Rep_3394_c_32_4 5028 6443 - HTH_AraC | HTH_AraC
TC Rep_3394_c_32 Rep_3394_c_32_5 6445 8226 - 8.A.59.2.1
TC Rep_3394_c_32 Rep_3394_c_32_6 8632 9567 + 3.A.1.1.10
TC Rep_3394_c_32 Rep_3394_c_32_7 9605 10507 + 3.A.1.1.10
pfam Rep_3394_c_32 Rep_3394_c_32_8 10550 12184 + SBP_bac_1 | SBP_bac_8
CAZyme Rep_3394_c_32 Rep_3394_c_32_9 12427 14088 + GH123
Gene ID: Rep_3394_c_32_2
Type: CAZyme
Location: 1676 - 3649 (+)
Gene ID: Rep_3394_c_32_3
Type:
Location: 3706 - 4860 (+)
Gene ID: Rep_3394_c_32_4
Type: TF
Location: 5028 - 6443 (-)
Gene ID: Rep_3394_c_32_5
Type: TC
Location: 6445 - 8226 (-)
Gene ID: Rep_3394_c_32_6
Type: TC
Location: 8632 - 9567 (+)
Gene ID: Rep_3394_c_32_7
Type: TC
Location: 9605 - 10507 (+)
Gene ID: Rep_3394_c_32_8
Type: pfam
Location: 10550 - 12184 (+)
Gene ID: Rep_3394_c_32_9
Type: CAZyme
Location: 12427 - 14088 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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