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Cluster: Rep_3394_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3394_c_15 Rep_3394_c_15_3 3746 5278 + CBM91 | GH43_11
CAZyme Rep_3394_c_15 Rep_3394_c_15_4 5275 6657 + GH4
TC Rep_3394_c_15 Rep_3394_c_15_5 6696 7682 + 3.A.1.1.11
TC Rep_3394_c_15 Rep_3394_c_15_6 7679 8533 + 3.A.1.1.11
STP Rep_3394_c_15 Rep_3394_c_15_7 8571 9938 + SBP_bac_1
CAZyme Rep_3394_c_15 Rep_3394_c_15_8 10033 12882 + CBM9 | CE15
CAZyme Rep_3394_c_15 Rep_3394_c_15_9 13002 14162 + GH10
Gene ID: Rep_3394_c_15_3
Type: CAZyme
Location: 3746 - 5278 (+)
Gene ID: Rep_3394_c_15_4
Type: CAZyme
Location: 5275 - 6657 (+)
Gene ID: Rep_3394_c_15_5
Type: TC
Location: 6696 - 7682 (+)
Gene ID: Rep_3394_c_15_6
Type: TC
Location: 7679 - 8533 (+)
Gene ID: Rep_3394_c_15_7
Type: STP
Location: 8571 - 9938 (+)
Gene ID: Rep_3394_c_15_8
Type: CAZyme
Location: 10033 - 12882 (+)
Gene ID: Rep_3394_c_15_9
Type: CAZyme
Location: 13002 - 14162 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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