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Cluster: Rep_3394_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3394_c_62 Rep_3394_c_62_2 1921 3945 + GH42
CAZyme Rep_3394_c_62 Rep_3394_c_62_3 4325 5971 - CBM91 | GH43_11
TC Rep_3394_c_62 Rep_3394_c_62_4 5940 6599 - 9.B.28.1.2
CAZyme Rep_3394_c_62 Rep_3394_c_62_5 6654 8006 - GH30_1
TC Rep_3394_c_62 Rep_3394_c_62_6 8047 8904 - 3.A.1.1.47
TC Rep_3394_c_62 Rep_3394_c_62_7 8917 9792 - 3.A.1.1.18
STP Rep_3394_c_62 Rep_3394_c_62_8 9933 11273 - SBP_bac_1
CAZyme Rep_3394_c_62 Rep_3394_c_62_9 11397 13163 - CBM6
Gene ID: Rep_3394_c_62_2
Type: CAZyme
Location: 1921 - 3945 (+)
Gene ID: Rep_3394_c_62_3
Type: CAZyme
Location: 4325 - 5971 (-)
Gene ID: Rep_3394_c_62_4
Type: TC
Location: 5940 - 6599 (-)
Gene ID: Rep_3394_c_62_5
Type: CAZyme
Location: 6654 - 8006 (-)
Gene ID: Rep_3394_c_62_6
Type: TC
Location: 8047 - 8904 (-)
Gene ID: Rep_3394_c_62_7
Type: TC
Location: 8917 - 9792 (-)
Gene ID: Rep_3394_c_62_8
Type: STP
Location: 9933 - 11273 (-)
Gene ID: Rep_3394_c_62_9
Type: CAZyme
Location: 11397 - 13163 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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