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Cluster: Rep_3376_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3376_c_10 Rep_3376_c_10_3 5709 6356 - CE9
CAZyme Rep_3376_c_10 Rep_3376_c_10_4 6353 6769 - CE9
pfam Rep_3376_c_10 Rep_3376_c_10_5 6807 7535 - Glucosamine_iso
pfam Rep_3376_c_10 Rep_3376_c_10_6 7581 8420 - Hydrolase | S6PP | Hydrolase_3
CAZyme Rep_3376_c_10 Rep_3376_c_10_7 8566 9621 - GH170
TC Rep_3376_c_10 Rep_3376_c_10_8 9605 11062 - 4.A.1.2.7
STP Rep_3376_c_10 Rep_3376_c_10_9 11175 12071 - SIS
TC Rep_3376_c_10 Rep_3376_c_10_10 12579 13115 + 4.A.1.2.11
STP Rep_3376_c_10 Rep_3376_c_10_11 13150 13407 + PTS-HPr
TC Rep_3376_c_10 Rep_3376_c_10_12 13441 15063 + 8.A.7.1.1
Gene ID: Rep_3376_c_10_3
Type: CAZyme
Location: 5709 - 6356 (-)
Gene ID: Rep_3376_c_10_4
Type: CAZyme
Location: 6353 - 6769 (-)
Gene ID: Rep_3376_c_10_5
Type: pfam
Location: 6807 - 7535 (-)
Gene ID: Rep_3376_c_10_6
Type: pfam
Location: 7581 - 8420 (-)
Gene ID: Rep_3376_c_10_7
Type: CAZyme
Location: 8566 - 9621 (-)
Gene ID: Rep_3376_c_10_8
Type: TC
Location: 9605 - 11062 (-)
Gene ID: Rep_3376_c_10_9
Type: STP
Location: 11175 - 12071 (-)
Gene ID: Rep_3376_c_10_10
Type: TC
Location: 12579 - 13115 (+)
Gene ID: Rep_3376_c_10_11
Type: STP
Location: 13150 - 13407 (+)
Gene ID: Rep_3376_c_10_12
Type: TC
Location: 13441 - 15063 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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