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Cluster: Rep_336_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_336_c_38 Rep_336_c_38_5 6680 9046 - 9.A.8.1.6
CAZyme Rep_336_c_38 Rep_336_c_38_6 9212 11224 - GH13_14
NULL(UNKNOWN) Rep_336_c_38 Rep_336_c_38_7 11320 11628 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_336_c_38 Rep_336_c_38_8 11751 13061 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC Rep_336_c_38 Rep_336_c_38_9 13238 15634 + 1.B.14.6.7
TF Rep_336_c_38 Rep_336_c_38_10 15631 15804 - PspC
TC Rep_336_c_38 Rep_336_c_38_11 15818 17806 - 3.A.1.121.4
pfam Rep_336_c_38 Rep_336_c_38_12 17915 18460 - 5-FTHF_cyc-lig
TC Rep_336_c_38 Rep_336_c_38_13 18858 20492 - 9.B.174.1.1
Gene ID: Rep_336_c_38_5
Type: TC
Location: 6680 - 9046 (-)
Gene ID: Rep_336_c_38_6
Type: CAZyme
Location: 9212 - 11224 (-)
Gene ID: Rep_336_c_38_7
Type:
Location: 11320 - 11628 (-)
Gene ID: Rep_336_c_38_8
Type: pfam
Location: 11751 - 13061 (-)
Gene ID: Rep_336_c_38_9
Type: TC
Location: 13238 - 15634 (+)
Gene ID: Rep_336_c_38_10
Type: TF
Location: 15631 - 15804 (-)
Gene ID: Rep_336_c_38_11
Type: TC
Location: 15818 - 17806 (-)
Gene ID: Rep_336_c_38_12
Type: pfam
Location: 17915 - 18460 (-)
Gene ID: Rep_336_c_38_13
Type: TC
Location: 18858 - 20492 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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