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Cluster: Rep_3366_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3366_c_34 Rep_3366_c_34_1 312 1385 - GH179
CAZyme Rep_3366_c_34 Rep_3366_c_34_2 1582 3612 - GH31_4
NULL(UNKNOWN) Rep_3366_c_34 Rep_3366_c_34_3 3749 4882 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3366_c_34 Rep_3366_c_34_4 5118 5984 - 3.A.1.1.11
TC Rep_3366_c_34 Rep_3366_c_34_5 5999 6895 - 3.A.1.1.20
TC Rep_3366_c_34 Rep_3366_c_34_6 7026 8396 - 3.A.1.1.44
TC Rep_3366_c_34 Rep_3366_c_34_7 8638 10494 + 8.A.59.2.1
TF Rep_3366_c_34 Rep_3366_c_34_8 10491 12071 + HTH_AraC
TC Rep_3366_c_34 Rep_3366_c_34_9 12300 14045 + 3.A.1.106.2
pfam Rep_3366_c_34 Rep_3366_c_34_10 14283 17009 + FtsX
TC Rep_3366_c_34 Rep_3366_c_34_11 17043 17777 + 3.A.1.125.3
Gene ID: Rep_3366_c_34_1
Type: CAZyme
Location: 312 - 1385 (-)
Gene ID: Rep_3366_c_34_2
Type: CAZyme
Location: 1582 - 3612 (-)
Gene ID: Rep_3366_c_34_3
Type:
Location: 3749 - 4882 (-)
Gene ID: Rep_3366_c_34_4
Type: TC
Location: 5118 - 5984 (-)
Gene ID: Rep_3366_c_34_5
Type: TC
Location: 5999 - 6895 (-)
Gene ID: Rep_3366_c_34_6
Type: TC
Location: 7026 - 8396 (-)
Gene ID: Rep_3366_c_34_7
Type: TC
Location: 8638 - 10494 (+)
Gene ID: Rep_3366_c_34_8
Type: TF
Location: 10491 - 12071 (+)
Gene ID: Rep_3366_c_34_9
Type: TC
Location: 12300 - 14045 (+)
Gene ID: Rep_3366_c_34_10
Type: pfam
Location: 14283 - 17009 (+)
Gene ID: Rep_3366_c_34_11
Type: TC
Location: 17043 - 17777 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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